Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52700 336 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 332 / 3e-115 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G20060 309 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52695 164 / 4e-50 alpha/beta-Hydrolases superfamily protein (.1) AT1G52460 123 / 3e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 118 / 7e-33 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 116 / 8e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 115 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52440 91 / 5e-22 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 87 / 2e-21 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014347 [exp] 520 / 0 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10008078 [exp] 326 / 3e-113 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10019438 [exp] 307 / 8e-106 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 301 / 8e-103 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10002034 [exp] 196 / 8e-61 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173700 [exp] 364 / 2e-128 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 362 / 2e-127 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G030200 [exp] 332 / 8e-116 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 330 / 4e-115 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G070700 [exp] 308 / 4e-106 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.011G023000 [exp] 86 / 1e-19 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10026054 pacid=23173100 polypeptide=Lus10026054 locus=Lus10026054.g ID=Lus10026054.BGIv1.0 annot-version=v1.0 ATGAGCTACCAGCAGCAGCAGTTCCATATGGCATCAGGGAGTACAAGTGGGAGAAGGTCAGCAGTTGAATTCGGAAGGACTCATGTGGTCAGGCCAAGGG GTCAGCACCAAGCTACTATTGTTTGGCTCCATGGTATGGGTGACAATGGCTCCAGCTGGTCGCAGGTCCTGGAAGCACTGTCTATACCTAATATCAAATG GATATGCCCAACAGCACCAAGTCGACCTGTGAGAATGCTGGGTGGATATCGTTGCACAGCATGGTTTGACGTCGAGGAGATGTCGGAAGATACCATGGAA GACATTGACGGCTTAGATGCTTCAGCCGCCCATATCGCCAACTTGTTGTCCAGTGAGCCATCCGACGTGAAAGTGGGAATCGGAGGGTTCAGTATGGGCG GTGCAATCGCACTTTACTCGGCAACTTGTGCTGTCCTTGGCCGTTTTGGGAATGCAAATATTCCTTACGCCATTAACCCTACTGCCGTTGTCAGCCTCAG CGGCTGGCTTCCTTCTGGCTCAAGGAACTTGCGCAACAAAATACAAGGGTCCCATGATGCTGCGAGGCGTGCTGCATGGCTCCCCATTCTTGTTACCCAC GGCACCATTGACGACCAAGTCCCTTATAGCTATGGAGAAAAGTCTGCACGCTGGTTATGTAACGCTGGATTCGGGCGACTTACGTTCAAGCGTTACGATG GGATCGGGCATTACACAGTACCAAAGGAAATGGAAGAGGTGAAGAACTGGATAGCAGCATGCTTTGGTCTACCAACGCATGGATGA
AA sequence Show only first row Show all	>Lus10026054 pacid=23173100 polypeptide=Lus10026054 locus=Lus10026054.g ID=Lus10026054.BGIv1.0 annot-version=v1.0 MSYQQQQFHMASGSTSGRRSAVEFGRTHVVRPRGQHQATIVWLHGMGDNGSSWSQVLEALSIPNIKWICPTAPSRPVRMLGGYRCTAWFDVEEMSEDTME DIDGLDASAAHIANLLSSEPSDVKVGIGGFSMGGAIALYSATCAVLGRFGNANIPYAINPTAVVSLSGWLPSGSRNLRNKIQGSHDAARRAAWLPILVTH GTIDDQVPYSYGEKSARWLCNAGFGRLTFKRYDGIGHYTVPKEMEEVKNWIAACFGLPTHG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	0	1
					Lus10011342 [exp]	3.7	0.8520
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	7.9	0.8565
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	9.8	0.8325
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10043095 [exp]	9.9	0.7965
AT2G03430			Ankyrin repeat family protein ...		Lus10010667 [exp]	10.3	0.7508
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	14.3	0.8254
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	14.6	0.8391
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	19.6	0.8241
AT1G67540			unknown protein		Lus10037003 [exp]	19.9	0.8059
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	20.4	0.8225

Compare expression of checked genes

Lus10026054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.