Plant FIBer expression Database

Lus10026055 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G13440 662 / 0 glucose-inhibited division family A protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014348
[exp]
797 / 0 AT2G13440 1117 / 0.0 glucose-inhibited division family A protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G066300
[exp]
684 / 0 AT2G13440 1058 / 0.0 glucose-inhibited division family A protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01134 GIDA Glucose inhibited division protein A
Representative CDS sequence
>Lus10026055 pacid=23173302 polypeptide=Lus10026055 locus=Lus10026055.g ID=Lus10026055.BGIv1.0 annot-version=v1.0
ATGGCGACGGCGCCGGCAGCGGCGGCTCTCCATTTATCTCGCTTACGCATTCGGCGGTCCCATTCCGCTTTGTTATCTTCTTGTCTTATCCCTTCTCCTT
CTGCTCTTCTATTCTCTACTTGTCCCTCTTTCCCCCGCAAGTATCCTCGCCTCTCCTTCAGCCTTCGCCGCACTCGCACCACCTCCTTCCGCCGCTTCTC
TGTTCTCGCTTCTTCTTCCTCCTCTCCTGAATTGAGTGGCTGTGCTGAGGAAACCGGGGAAAGATATGATGTGATTGTGGTTGGCGGAGGACATGCAGGT
TGCGAGGCAGCTCTTGCTTCTGCTCGCTTAGGGGCTAAAACTCTTCTTCTCACCTTAAACTTAGATCGGATAGCATGGCAGGTCAGCTGGTTTAGTTTTG
ATCCTGATGTGCATGTTGAAAGGGAGCAGATGTGTTGCTACCTAACCCGCACAACAAAATTAACCCACCAAATTATCAAGGATAACTTGCATGAAACTCC
GACTTATGGAGGTTGGGTTGAAGCAAAGGGGCCCAGATACTGTCCTTCTATCGAGGACAAGATAGTAAGATTTGAAGGTAAAGAGTCGCATCAGATTTTC
CTTGAACCAGAGGGTCGAGATGTGCCTGAGTTGTACGTACAGGGATTTTCAACAGGTTTACCGGAGAGACTTCAGTTACCACTCTTGAGAACCTTGCCTG
GACTTGAAAACTGTTCAATGTTAAGGCCTGCATATGCTGTTGAGTATGACTTCCTACCAGCACATCAATGTACTAGGTCTCTTATGACAAAGAAAGTGGA
GGGGCTTTTCTTCTCTGGTCAGATAAATGGAACAACGGGCTATGAAGAGGCTGCAGCTCAGGGAATTATTTCTGGAATCAATGCCGCAAGACATTCATGT
GGTAAACCTCTAATCGTTCTTGAGAGGGAAAGCAGTTATATCGGCACATTGATTGATGATCTGATCACAAAGGATCTACGAGAGCCTTACCGCATGTTAA
CAAGTCGCTCGGAGCATCGATTACTTCTACGATCTGACAATGCTGATAGTCGTCTCACACCTTTGGGACGTGAAATTGGGTTGATAGATGATAGACGATG
GGGACTTTATCAGGAGAAACAAGCACGCATATGTCAGGAAAAAGAACGTCTGAAATCAGTCAGGATATCAGTTGCCTGTCTGACGTCTGTTGATTTATTT
ACCAGAACTGTACTCATGCTAACTCAGTTCGTTTCAGGAGGAGACTTGGCTGCTGATGTTACCCGTATATCCGGGCAACCCGTAAAGGATTTCACAACGC
TGGAGAGCCTCCTAAAGAAGCCCCATATACAATATGAAGTACTTGACAATCATGGGTTCGGGAATACCGCCTTGTCCCGGGAGGAGAAAGAATGTGTAGA
GATTGATGTGAAGTATGAGGGTTTCATCGTACGTCAACGAATTCAACTGCAGCAGATGGCTCGTCAACAAAACAGGCCAATCCCCGAGAACATAGATTAC
TATGCAATGACAACTTTATCAAATGAATCTCGCGAAAAGCTATCCAAGGTCAGACCACAAACAATTGGTCAAGCAAGCAGAGTTGGTGGGGTGAGCCCAG
CAGACATCACTGCACTTCTCATCATCCTCGAATCGAACAGGCGGAAAGCACAGGACCTCAAGAGGCATCACATGCTTTCTTCTGTCGTCACAGAAGCCAA
CTTGGAGCCTCACGTACCAGCTGCGGAACCAATCATTTCATGA
AA sequence
>Lus10026055 pacid=23173302 polypeptide=Lus10026055 locus=Lus10026055.g ID=Lus10026055.BGIv1.0 annot-version=v1.0
MATAPAAAALHLSRLRIRRSHSALLSSCLIPSPSALLFSTCPSFPRKYPRLSFSLRRTRTTSFRRFSVLASSSSSPELSGCAEETGERYDVIVVGGGHAG
CEAALASARLGAKTLLLTLNLDRIAWQVSWFSFDPDVHVEREQMCCYLTRTTKLTHQIIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFEGKESHQIF
LEPEGRDVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCTRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSC
GKPLIVLERESSYIGTLIDDLITKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWGLYQEKQARICQEKERLKSVRISVACLTSVDLF
TRTVLMLTQFVSGGDLAADVTRISGQPVKDFTTLESLLKKPHIQYEVLDNHGFGNTALSREEKECVEIDVKYEGFIVRQRIQLQQMARQQNRPIPENIDY
YAMTTLSNESREKLSKVRPQTIGQASRVGGVSPADITALLIILESNRRKAQDLKRHHMLSSVVTEANLEPHVPAAEPIIS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G13440 glucose-inhibited division fam... Lus10026055
[exp]
0 1
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Lus10009139
[exp]
1.0 0.9518
AT4G31210 DNA topoisomerase, type IA, co... Lus10026990
[exp]
2.0 0.9434
AT2G13440 glucose-inhibited division fam... Lus10014348
[exp]
2.2 0.9329
AT1G23400 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG O... Lus10029134
[exp]
2.6 0.9287
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Lus10041094
[exp]
4.7 0.9448
AT5G26742 EMB1138 embryo defective 1138, DEAD bo... Lus10001425
[exp]
5.7 0.9445
AT4G31210 DNA topoisomerase, type IA, co... Lus10020186
[exp]
6.9 0.9310
AT4G29750 CRS1 / YhbY (CRM) domain-conta... Lus10027610
[exp]
9.8 0.9238
AT2G31400 GUN1 genomes uncoupled 1 (.1) Lus10022290
[exp]
10.0 0.9094
AT3G13490 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS ... Lus10013408
[exp]
11.3 0.9155

Lus10026055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.