Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042117 [exp] 67 / 3e-13 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 57 / 5e-10 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 56 / 2e-09 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 48 / 9e-07 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 45 / 6e-06 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10040208 [exp] 40 / 0.0002 AT3G14470 49 / 8e-07 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273900 [exp] 58 / 2e-10 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 45 / 7e-06 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136266 [exp] 44 / 2e-05 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 43 / 4e-05 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 42 / 5e-05 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 42 / 9e-05 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 42 / 9e-05 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 42 / 0.0001 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026056 pacid=23173196 polypeptide=Lus10026056 locus=Lus10026056.g ID=Lus10026056.BGIv1.0 annot-version=v1.0 ATGGTGGACAAGAAAGCGATCCTGAACGCAGCCAAAGAAGGCGCAACAAAACTAGGCAAATCCGCCCTCCCAATCCTCCAGGACGGAGCCAAGCTGTTCT TCGGACTGAAAGAGGAGCTGACAGATCTGAGCTCCACATTGCGAACGATCGAAGCTGTGGTGAGAGATGCAGAGGAGCAGCAGGGGACGAGGCCTCTCAG CAACCAGGATCGAGACTGGGTCAACAAGCTTTCCGATGTGATGAATGAAGGAGTGAAGCTTCTGGATTGCTACTGGGACAGGAGCAAGAAGCAGGCGGCG ATTCTGGACGGCGGCGGCGGCGGACGGGGTGATCACTTCAACTGCGTCAATTTGGTCAACTACGCCTGGTCGTTTCCTTACCATCTGTACGCCGACTTGA TGACGGCGAAAAAGGTTAAGGAGATCAGGGAGCGGCTCGATGGCTGCGCCAGAGATCGGAGGATGTTTCAGCTTCGTGTGTGA
AA sequence Show only first row Show all	>Lus10026056 pacid=23173196 polypeptide=Lus10026056 locus=Lus10026056.g ID=Lus10026056.BGIv1.0 annot-version=v1.0 MVDKKAILNAAKEGATKLGKSALPILQDGAKLFFGLKEELTDLSSTLRTIEAVVRDAEEQQGTRPLSNQDRDWVNKLSDVMNEGVKLLDCYWDRSKKQAA ILDGGGGGRGDHFNCVNLVNYAWSFPYHLYADLMTAKKVKEIRERLDGCARDRRMFQLRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026056 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	2.6	0.9602
					Lus10014873 [exp]	4.0	0.9594
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	6.7	0.9574
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	7.5	0.9571
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	8.5	0.9370
					Lus10026417 [exp]	8.5	0.9294
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	9.5	0.9561
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	10.6	0.9480
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000582 [exp]	11.3	0.9311
AT2G14095			unknown protein		Lus10012704 [exp]	13.0	0.9404

Compare expression of checked genes

Lus10026056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.