Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44450 554 / 0 BGLU15 beta glucosidase 15 (.1) AT5G44640 550 / 0 BGLU13 beta glucosidase 13 (.1) AT5G42260 543 / 0 BGLU12 beta glucosidase 12 (.1) AT3G60130 524 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT2G44480 518 / 0 BGLU17 beta glucosidase 17 (.1.2) AT2G25630 510 / 3e-178 BGLU14 beta glucosidase 14 (.1) AT1G47600 500 / 5e-174 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT1G51470 499 / 2e-173 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT1G26560 479 / 8e-166 BGLU40 beta glucosidase 40 (.1) AT5G24550 476 / 2e-164 BGLU32 beta glucosidase 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024065 [exp] 716 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10036445 [exp] 625 / 0 AT2G44450 506 / 8e-176 beta glucosidase 15 (.1) Lus10012687 [exp] 604 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10008503 [exp] 570 / 0 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1) Lus10031235 [exp] 563 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 561 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 558 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 554 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 546 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 581 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 560 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 556 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.T085301 [exp] 553 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 552 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G227200 [exp] 545 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 506 / 4e-176 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G223500 [exp] 494 / 9e-172 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222800 [exp] 494 / 9e-172 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2) Potri.001G225808 [exp] 493 / 5e-171 AT3G60130 475 / 1e-163 beta glucosidase 16 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10026057 pacid=23173095 polypeptide=Lus10026057 locus=Lus10026057.g ID=Lus10026057.BGIv1.0 annot-version=v1.0 ATGGGAATACAGGAACAGAGTTCTACTCTCTGTATCTTATCATCATTATGCTTATTCACTGTGTTCATCGTAGCAGCCAATGCTGCAGACGATGCATCTG TGACACCAATTAAACGCAGCCAATTCCCACCCGATTTCCTCTTTGGGGCAGCCATCGCCGCTTATCAAGTTGAAGGTGCAGCCATGGAAGATGGTAAAGG ACAAAGCATCTGGGATTACTACACTCACAAACATCCAGAAAGGATCAAGGATGGGAGTAATGGAGACTTAGCTGCTGATTCATACCATCTATATAAAAAA GACATACAACTACTTAAGGATATGGGCATGAATACTTACAGAATATCAATTTCATGGCCTAGGATATTGCCAACCGGGAAGCTGGCCGGACGGGTGAACC AAAAAGGCGTCCAGTTCTACAACGACGTGATCAATGAGATGTTGGCTCAAGGTATAACACCATTTGTCACAATTTTCCACTGGGATTCTCCCCAACCGTT GCAAGAAGAGTACGGTGGCTTTTTAAGCAACAAAATTGTGAACGATTTTCGGGACTTTGCGGATGTGTGCTTCAAAGAATTTGGAGATCGTGTGAAGCAC TGGGTCACGGTCAACGAACCACATTCGATCGCAAGAGGTGCGTATTCGGAAGGTGAGATGGCGCCGGGTAGATGTACCAGTAGCAAAGAACGGAAGTGCG ATGAGGGAAACTCAGGAACCGAACCTTATATAGTTGCTCACAACCTACTTCTTTCTCACGCGGCTGCAGTTCAGTTGTACAGAGAGAAGTACCAGGCAAC TCAAAAGGGCAAGATCGGAATAACATTGAACTGTAATTGGTACATTCCGTTCGACGAGAATAACAAAAAAGATCAAGAAGCTGTGTTCCGAGGGATCGAT TTCATATTGGGCTGGTTCTTGGAGCCAATTGTGAGAGGAGATTATCCGACATCAATGAGGACACTGGTTGGCAAAAGACTTCCAACATTTACCCCAGAGG AATCAAAACAACTCAAGGGATCCATTGATTTCTTGGGTCTCAACTATTACACTACTTTCTATGCACAAGATGTACCACTTACAGAAGTTGTTCCCGAACA TTACAAGTACGACCCACATGTCATTCCTCACTTTTCCCGTAACATGGTACCAATTGGACCAACGACGGCAGCGTTTTGGCTTTCGATTTATCCAAAGGGA TTCCGCGAGCTTATATTGTACGTAAAGGATCATTACGATAACCCGATCATCTTCATTACTGAAAACGGGGTTCCGGACAACGGAACTTATCTTGACACGG GTCCAGGAGAACCACCGAACGACGCTGTGCGAATAGAGTATCATAGCGGTCACCTGAGCTACTTGAATATGGCGATGGAGGAGGGTGCGAATGTGAAAGG CTACTACGCTTGGTCTTTGCTCGACAACTTCGAATGGGCCGAAGGTTTCACTCTGCGATTCGGGCTGCATTTCGTGGATTTTAAGAACCCGTCTACTCGG ATTCCTAAACAATCAGCGTTCTGGTTCAGACAGTTCCTTAGCAGTTAA
AA sequence Show only first row Show all	>Lus10026057 pacid=23173095 polypeptide=Lus10026057 locus=Lus10026057.g ID=Lus10026057.BGIv1.0 annot-version=v1.0 MGIQEQSSTLCILSSLCLFTVFIVAANAADDASVTPIKRSQFPPDFLFGAAIAAYQVEGAAMEDGKGQSIWDYYTHKHPERIKDGSNGDLAADSYHLYKK DIQLLKDMGMNTYRISISWPRILPTGKLAGRVNQKGVQFYNDVINEMLAQGITPFVTIFHWDSPQPLQEEYGGFLSNKIVNDFRDFADVCFKEFGDRVKH WVTVNEPHSIARGAYSEGEMAPGRCTSSKERKCDEGNSGTEPYIVAHNLLLSHAAAVQLYREKYQATQKGKIGITLNCNWYIPFDENNKKDQEAVFRGID FILGWFLEPIVRGDYPTSMRTLVGKRLPTFTPEESKQLKGSIDFLGLNYYTTFYAQDVPLTEVVPEHYKYDPHVIPHFSRNMVPIGPTTAAFWLSIYPKG FRELILYVKDHYDNPIIFITENGVPDNGTYLDTGPGEPPNDAVRIEYHSGHLSYLNMAMEEGANVKGYYAWSLLDNFEWAEGFTLRFGLHFVDFKNPSTR IPKQSAFWFRQFLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	0	1
					Lus10032696 [exp]	1.0	0.9993
					Lus10043100 [exp]	1.4	0.9981
					Lus10022993 [exp]	3.5	0.9777
					Lus10038642 [exp]	3.5	0.9773
					Lus10002291 [exp]	6.5	0.9616
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038325 [exp]	6.6	0.9306
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	7.5	0.9416
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	8.4	0.9330
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	8.5	0.9389
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	8.8	0.9442

Compare expression of checked genes

Lus10026057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.