Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15880 288 / 4e-100 ATGOS11, GOS11 golgi snare 11 (.1) AT2G45200 126 / 4e-36 ATGOS12, GOS12 golgi snare 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014349 [exp] 269 / 2e-93 AT1G15880 214 / 7e-72 golgi snare 11 (.1) Lus10001986 [exp] 127 / 1e-36 AT2G45200 437 / 5e-158 golgi snare 12 (.1.2) Lus10009285 [exp] 123 / 5e-35 AT2G45200 444 / 2e-160 golgi snare 12 (.1.2) Lus10030294 [exp] 74 / 4e-16 AT2G45200 297 / 2e-102 golgi snare 12 (.1.2) Lus10015880 [exp] 60 / 7e-12 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047100 [exp] 302 / 1e-105 AT1G15880 369 / 2e-131 golgi snare 11 (.1) Potri.003G180800 [exp] 298 / 9e-104 AT1G15880 365 / 4e-130 golgi snare 11 (.1) Potri.002G145200 [exp] 121 / 3e-34 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.014G066800 [exp] 115 / 7e-32 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10026058 pacid=23173144 polypeptide=Lus10026058 locus=Lus10026058.g ID=Lus10026058.BGIv1.0 annot-version=v1.0 ATGGATGCTCCGACCTCATGGGACGCGTTGCGCAAACAGGCAAGAAAACTTGAAGCTCAATTAGATGAGCAGATGAATTCGTACCGGAAACTAGTATCCT CAAAAGCTTCTGCAAAAGTGGATTCTGAAGAAAATGATGTTGAATCTGGTATAGAGCGACTATTAGATCAGCTTCAACAAGAGTTTCATCGTCTCCGCTC TAGTCTTCGAGCTAAGCAAGAACATGCCTCACTTATTGAGGACTTCAGAGAATTTGATCGAACAAGACTCGACTTAGAAGAAGGCACTGACTCATCAGGA CAAGCTCTACTTAGAGAGCATGCAACCATCAACAGGAGTACTGGACAGGTAGATGTTGTAATTTCTCAAGCTCAGGCAACCCTCGGTGCCCTGGGTTTTC AACGTTCGACATTCGGGGGAATCAATTCAAAGCTCACAAACGTTAGCAGCCGCCTCCCTACGGTGAATAGCATTCTTAGTTCAATAAAGAGGAAGAAGTC GATGGATACCTTGATTCTATCTCTGGTTGCATCAGTATGCACCTTCCTTATATTCATTTACTGGTTGACAAAGTAA
AA sequence Show only first row Show all	>Lus10026058 pacid=23173144 polypeptide=Lus10026058 locus=Lus10026058.g ID=Lus10026058.BGIv1.0 annot-version=v1.0 MDAPTSWDALRKQARKLEAQLDEQMNSYRKLVSSKASAKVDSEENDVESGIERLLDQLQQEFHRLRSSLRAKQEHASLIEDFREFDRTRLDLEEGTDSSG QALLREHATINRSTGQVDVVISQAQATLGALGFQRSTFGGINSKLTNVSSRLPTVNSILSSIKRKKSMDTLILSLVASVCTFLIFIYWLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	0	1
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	2.0	0.9081
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	2.8	0.8885
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	4.2	0.8744
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10015525 [exp]	6.0	0.8688
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	6.2	0.9068
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	7.9	0.8950
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	8.0	0.8448
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	8.8	0.8516
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	9.2	0.8203
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	9.4	0.8350

Compare expression of checked genes

Lus10026058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.