Plant FIBer expression Database

Lus10026059 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014350
[exp]
127 / 1e-37 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G047500
[exp]
52 / 1e-08 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
Potri.003G180600
[exp]
51 / 2e-08 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
Potri.018G021400
[exp]
46 / 1e-06 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
Potri.006G261700
[exp]
43 / 1e-05 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10026059 pacid=23173265 polypeptide=Lus10026059 locus=Lus10026059.g ID=Lus10026059.BGIv1.0 annot-version=v1.0
ATGAGGGCTTCTTCGTCTTTTCACTTCTCCTCCAGCATTTCCGCCCTTCCCTTGCACGGTTCGCCGCTCGGAATTCAGGCCCATTCGCTGATCCACAAGC
CCAATATTATTAGTATCGCCGACCAGCGACGTCCCGCCGTCGGCCGGCTGGCGGCGGAGTATAATTTCCACCTAGGATCCTCGACGACGACGTCGTCTGG
CAGGTTTGATGCTGGCCGGAGGGTATCTCCTGCGACGGCGGATGGGATTATGATGATGCACCACGGCGGTGGTGGTGGGTTTTGGTGGAGTGGTGGCGGG
GGTGGGGACGGCGGTGGTGTTCGCCCTAAACAAGATGATTTGCCAAAGCTTGATCTCTCACTTAAGCTGTGA
AA sequence
>Lus10026059 pacid=23173265 polypeptide=Lus10026059 locus=Lus10026059.g ID=Lus10026059.BGIv1.0 annot-version=v1.0
MRASSSFHFSSSISALPLHGSPLGIQAHSLIHKPNIISIADQRRPAVGRLAAEYNFHLGSSTTTSSGRFDAGRRVSPATADGIMMMHHGGGGGFWWSGGG
GGDGGGVRPKQDDLPKLDLSLKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026059
[exp]
0 1
AT1G66340 AtETR1, EIN1, E... ETHYLENE RESPONSE 1, ETHYLENE ... Lus10031382
[exp]
17.7 0.8607
AT2G01490 phytanoyl-CoA dioxygenase (Phy... Lus10013462
[exp]
22.9 0.8627
AT5G10830 S-adenosyl-L-methionine-depend... Lus10002994
[exp]
31.1 0.8423
AT2G25735 unknown protein Lus10007679
[exp]
36.3 0.8187
AT1G70570 anthranilate phosphoribosyltra... Lus10006201
[exp]
39.8 0.8452
AT3G46540 ENTH/VHS family protein (.1) Lus10016556
[exp]
43.3 0.8415
AT1G54610 Protein kinase superfamily pro... Lus10004144
[exp]
46.1 0.8301
AT3G25570 Adenosylmethionine decarboxyla... Lus10031919
[exp]
55.0 0.8338
AT4G03420 Protein of unknown function (D... Lus10018572
[exp]
75.6 0.8249
AT3G62270 HCO3- transporter family (.1) Lus10009995
[exp]
79.5 0.8082

Lus10026059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.