Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45650 816 / 0 subtilase family protein (.1) AT5G45640 635 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 529 / 1e-177 ATSBT5.4 Subtilase family protein (.1) AT2G04160 526 / 1e-176 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 516 / 9e-173 ARA12 Subtilase family protein (.1) AT3G14067 491 / 5e-163 Subtilase family protein (.1) AT3G14240 488 / 2e-161 Subtilase family protein (.1) AT4G10520 478 / 4e-158 Subtilase family protein (.1) AT1G32960 476 / 5e-157 ATSBT3.3 Subtilase family protein (.1) AT4G10550 475 / 1e-156 Subtilase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007083 [exp] 1082 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 1063 / 0 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 945 / 0 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10039086 [exp] 543 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 526 / 2e-176 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 526 / 5e-176 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 524 / 1e-175 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 524 / 1e-175 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 514 / 9e-172 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076700 [exp] 900 / 0 AT5G45650 970 / 0.0 subtilase family protein (.1) Potri.011G165900 [exp] 565 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 553 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 532 / 9e-179 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 527 / 6e-177 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 524 / 1e-175 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.009G144500 [exp] 523 / 3e-175 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.011G050000 [exp] 519 / 7e-174 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 514 / 4e-172 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 514 / 6e-172 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10026062 pacid=23173181 polypeptide=Lus10026062 locus=Lus10026062.g ID=Lus10026062.BGIv1.0 annot-version=v1.0 ATGAATATTCCGAGGAAGAAGAATCTTCTGTACATTGTCCTCCTCTTCTTCTTTTGTTCTGCTCTTTTGGAAGTCAACTGCGACGAAGAACCCAAGAAGA CTTACATAGTCTACTTGGGAGAGCACGTTAGAGGGGAGAAAACACGCGACCAGATATTACAAATCCACCGCTCTTATTTGTCGGCGGTCAAAGAATCCGA TGAAGACGCGGCGTCGTCTCTTATCTATAGCTACAAACATAGCATCAATGGCTTCGCCGCATCCCTCACCCCTCAACAAGCCTCCAAACTCAAAGAAATG GGAGAAGTGGTGGGAGTAATAGAGAGCCGGCCAAGGAAGTACTCAACCGGAACTACAAGGTCATGGGAATTCTCAGGGCTAAATGTGGCATCTCCTTATA ATAGTTACAGTTACGATTCCAATAACGCCAAGGATCAAGACAATACACTTCAAAGGGCTGCCTATGGCAAGAATGTCATCGTTGGGATCTTGGATGGCGG GGTGTGGCCAGAAGCAGAAAGTTTTAACGATTTTGGGATGGGACCCATCCCAAAATCGTGGAAAGGTATTTGTCAAACTGGCGAAGATTTCAACTCCTCT CATTGCAACAATAAAATAATTGGAGCAAGGTACTACTATAAGGGCTTCGAGAACCACCATGGCAAGTTGAATAAAACAGCGAACTCGAGGTCAGCGCGTG ACCTGGATGGACATGGGACCCATACAGCCTCGACCATAGCGGGCCGTCAAGTCCGTAACGTGTCGGCACTAGGCGGGTTTGGCCGTGGTACGGCCTCCGG AGGGGCACCGTTAGCCCGATTAGCCGTATACAAGGTATGTTGGACAGCCCCGGATAGAGAAAGAGGATATTGTGCAGCGGAAGACATACTGGCTGGCCCG GACCAGGCAATTGCCGATGGCGTCCATGTCATCAGCCTATCTATCGTCGTAGAGAGCCCAATCGACCACATCGACGATCCAATTTCGATCGGAGCATTTC ACTCCTTGAAGAAAAATATCATAGTCGTTGCCGCAGCTGGAAACTCAGGTCCTAACCCCGGAACCTTGTCAAATCCCTCACCTTGGATCATCTCTGTTGG TGCCAGTAGCTTGGATCGCAAGTTTTATCGGAATCTCGTTCTCGGGAACGGAAAAATAATCAAGGGAGAAACAATGAGTCCTGGCAATCAGGAGAAAACA CTTCCATTGATATACGCGGCGGATGCAGTCGATCCCAAGACAAAAGTACACAAGAACGATACGAACCAATGCCTTCCGGACTCGCTATCGCCCGAAAAGG TCAAAGGCAAGATAGTGTTGTGCTTGAGAGGTGCAGGGCAGAGACTTTTAAAGGGCATCGAAGTTAAACGAGCAGGTGGGGCCGGATTCATTCTCGGAAA CTCAGCAATGAACACAGACCTCCCAAGTGACACACACGTCCTCCCGGCTACCGCCGTCAATTACAAGAATGCCCTTGAGATCATCGCCTACATCAATTCA TCCAAGAAGAATTCGACGGCCAAGATTGGAGAAGCGGATACCGCTCTGGGGTACAAGCCTGCGCCTTTCATGGCGAACTTCACCAGCCGGGGTCCTAATG TCATCCATCCTTATGTTCTTAAGCCGGACATCTCAGCTCCGGGGATAAATGTACTGGCGGCATGGAGCCAAGCTACTAGACTAGCTGTAGATAATCAAAT TGTTAAGTATAATTTCGATTCTGGGACGTCAATGGCTACCCCTCATGTTGCTGCTTTAGCCGCACTTCTCAGAGCAATCCATCCAACTTGGTCTACCGCC GCCGTTAGATCTGCCATCATCACCACCGCTAGGACAAGGAACAACATGGGCGGGGCAATAAAAGACGAATCAGGGAAAACCGCAACCCCATTCGTTTTCG GGTCCGGTTACTTCCGCCCGACCAAGGCGGCCGATCCAGGACTTGTATACGACGCGTCGTATAAGCACTACTTTCACTACCTTTGTAGCTACGGGGTGAA AAAACCCGACGGAAAACACAAGTGCCCGAAACATTCACCGCCGGTATACAATCTCAATTACCCGTCGGTGTCGGTGCCGAAATTGAACGGTACCATAACC ATCAAGAGAACCGTAACGAACGTGGGTGGCGAAGGGAAAGCGGTCTACTTCTTCAGCGCGAAGCCACCGTTGGGGGTATCGGTGAAGGCGCGGCCGAGTG TTCTGTTCTTCAGTCGTGTCGGGCAGCGGAAGAGCTTCAAGTTGAGGATCAGGGCGCGAAAGGGGGAGCATAGTTACAGTAATGGTGCTGAGTATGGGTT TGGATGGTTTACTTGGAGGGATAATTATCATGTTGTTAGGAGTCCTATTGCGGTGTCTCTGGCCTCTCATTGA
AA sequence Show only first row Show all	>Lus10026062 pacid=23173181 polypeptide=Lus10026062 locus=Lus10026062.g ID=Lus10026062.BGIv1.0 annot-version=v1.0 MNIPRKKNLLYIVLLFFFCSALLEVNCDEEPKKTYIVYLGEHVRGEKTRDQILQIHRSYLSAVKESDEDAASSLIYSYKHSINGFAASLTPQQASKLKEM GEVVGVIESRPRKYSTGTTRSWEFSGLNVASPYNSYSYDSNNAKDQDNTLQRAAYGKNVIVGILDGGVWPEAESFNDFGMGPIPKSWKGICQTGEDFNSS HCNNKIIGARYYYKGFENHHGKLNKTANSRSARDLDGHGTHTASTIAGRQVRNVSALGGFGRGTASGGAPLARLAVYKVCWTAPDRERGYCAAEDILAGP DQAIADGVHVISLSIVVESPIDHIDDPISIGAFHSLKKNIIVVAAAGNSGPNPGTLSNPSPWIISVGASSLDRKFYRNLVLGNGKIIKGETMSPGNQEKT LPLIYAADAVDPKTKVHKNDTNQCLPDSLSPEKVKGKIVLCLRGAGQRLLKGIEVKRAGGAGFILGNSAMNTDLPSDTHVLPATAVNYKNALEIIAYINS SKKNSTAKIGEADTALGYKPAPFMANFTSRGPNVIHPYVLKPDISAPGINVLAAWSQATRLAVDNQIVKYNFDSGTSMATPHVAALAALLRAIHPTWSTA AVRSAIITTARTRNNMGGAIKDESGKTATPFVFGSGYFRPTKAADPGLVYDASYKHYFHYLCSYGVKKPDGKHKCPKHSPPVYNLNYPSVSVPKLNGTIT IKRTVTNVGGEGKAVYFFSAKPPLGVSVKARPSVLFFSRVGQRKSFKLRIRARKGEHSYSNGAEYGFGWFTWRDNYHVVRSPIAVSLASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	0	1
					Lus10021782 [exp]	3.6	0.9977
					Lus10023587 [exp]	5.1	0.9977
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	6.2	0.9977
					Lus10007927 [exp]	7.2	0.9977
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	8.1	0.9977
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	8.8	0.9977
AT1G29450			SAUR-like auxin-responsive pro...		Lus10025114 [exp]	8.9	0.8274
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042202 [exp]	9.5	0.9977
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	9.5	0.9482
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	10.2	0.9977

Compare expression of checked genes

Lus10026062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.