Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16010 650 / 0 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 638 / 0 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT2G03620 357 / 2e-120 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09690 296 / 5e-97 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G19640 290 / 3e-93 MRS2-3, MGT4 magnesium transporter 4 (.1) AT5G64560 266 / 2e-85 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT3G58970 265 / 4e-84 MRS2-4, MGT6 magnesium transporter 6 (.1) AT4G28580 202 / 2e-60 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09720 166 / 6e-48 Magnesium transporter CorA-like family protein (.1) AT5G09710 156 / 7e-44 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014353 [exp] 794 / 0 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10037081 [exp] 362 / 3e-123 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10036901 [exp] 267 / 3e-86 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10021887 [exp] 263 / 7e-84 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10015459 [exp] 261 / 1e-82 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10024860 [exp] 237 / 4e-74 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10001373 [exp] 235 / 8e-74 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10026745 [exp] 233 / 7e-73 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10025531 [exp] 230 / 4e-71 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183600 [exp] 707 / 0 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 706 / 0 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G096200 [exp] 390 / 4e-133 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 371 / 8e-126 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.009G086300 [exp] 286 / 6e-92 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.008G161400 [exp] 283 / 9e-92 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098200 [exp] 282 / 5e-91 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.010G077900 [exp] 279 / 4e-90 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098000 [exp] 261 / 1e-82 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.006G081700 [exp] 257 / 7e-81 AT3G58970 538 / 0.0 magnesium transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10026063 pacid=23173192 polypeptide=Lus10026063 locus=Lus10026063.g ID=Lus10026063.BGIv1.0 annot-version=v1.0 ATGACGGATCTGAAAGAGCGTCTGATTCCACCAAAACCTGCATCAGCAGTTAACCTTAGAGATCCATCATATAGACCATCTGCCTCTGGTCGTCAGCAGT TTCAAGGTGTGGATGTTATGGGGTTGAAGAAGCGTGGACAGGGCCTTCGTTCTTGGATACGAGTTGATTCGTCTGGGGATTCCCAGATTATTGAAGTCGA CAAGTTCACTATGATGCGGCGCTGTGATTTACCTGCTCGGGACCTCCGCTTACTTGATCCTCTGTTTGTGTACCCTTCCACAATTCTTGGACGAGAGAAA GCTATTGTTGTAAACTTGGAGCAGATTCGCTGCATTATTACAGCTGATGAGGTTCTGCTTCTAAATTCACTTGACAATTATGTGTTGCAATATGTAGTGG AGCTGCAACGGCGACTTACTACAGTTGCAGTAGGTGAGGTCTGGCAATCTGAAGGTCCTGAATTGAATAGAAGGAGAAGTAGTAGGAATTACGATAATGT ATTTGGAGCTCCATCCCCTGATTATTTGCCCTTTGAGTTTAAGGCTCTTGAGGTTGCTTTAGAGGCTGCCTGTACATTCCTTGATTCTCAGGCAGCAGAG TTGGAAATTGAAGCCTATCCATTATTAGATGAATTGACATCCAAGATCAGTACTCTAAACTTGGAGAGAGTGCGTCGATTGAAAAGCAGACTTGTAGCCT TAACCCGGAGAGTACAGAAGGTTAGGGATGAGATAGAACAACTAATGGATGATGACGGGGATATGGCTGAAATGTATCTCACTGAAAAGAAAAGCCGAAT GGAGTCATCGTTTTATGAACAGGGTTCCATGGGGGGATTCAGGTCAAACGATGGAGCGGTATCAGCCTCGGCTCCTGTTTCCCCTGTATCTTCACCCCCT GATTCCAGGCGGCTGGACAAGTGCTTAAGCATTGCAAGGAGTAGGCATGAAAGCATGAGAAGTTCCGAAAGCGGCACAGAGAGTATAGAAGAATTGGAAA TGTTGCTGGAAGCATACTTTGTAGTCATCGATAGCACCTTAAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATCAATATCCA GCTGGATAATGTACGAAATCAGCTGATCCAATTCGAGCTTATACTTACAACAGCGACCTTTGTGGTGGCGATATTCGGGGTGGTAGCAGGTATCTTTGGG ATGAACTTTGCGATACCTCTGTTCGATAACCCTGGTGCGTTTAAGTGGGTACTGATGATAACTGGAGTTTGTGGGGTGTTCATATTTTGTGCATTTGTAT GGTTCTTCAAATACAGAAGACTCATGCCGCTATAG
AA sequence Show only first row Show all	>Lus10026063 pacid=23173192 polypeptide=Lus10026063 locus=Lus10026063.g ID=Lus10026063.BGIv1.0 annot-version=v1.0 MTDLKERLIPPKPASAVNLRDPSYRPSASGRQQFQGVDVMGLKKRGQGLRSWIRVDSSGDSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREK AIVVNLEQIRCIITADEVLLLNSLDNYVLQYVVELQRRLTTVAVGEVWQSEGPELNRRRSSRNYDNVFGAPSPDYLPFEFKALEVALEAACTFLDSQAAE LEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMESSFYEQGSMGGFRSNDGAVSASAPVSPVSSPP DSRRLDKCLSIARSRHESMRSSESGTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELILTTATFVVAIFGVVAGIFG MNFAIPLFDNPGAFKWVLMITGVCGVFIFCAFVWFFKYRRLMPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	0	1
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	3.2	0.7115
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	7.3	0.6864
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	8.9	0.7077
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	27.9	0.6272
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10021776 [exp]	29.5	0.6471
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	30.7	0.6729
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	39.2	0.6376
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Lus10032961 [exp]	41.3	0.6549
AT1G22730			MA3 domain-containing protein ...		Lus10012205 [exp]	49.3	0.6268
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	51.6	0.6642

Compare expression of checked genes

Lus10026063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.