Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16570 604 / 0 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014357 [exp] 948 / 0 AT1G16570 662 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10031569 [exp] 340 / 6e-113 AT1G16570 242 / 2e-75 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394300 [exp] 682 / 0 AT1G16570 617 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10026065 pacid=23173139 polypeptide=Lus10026065 locus=Lus10026065.g ID=Lus10026065.BGIv1.0 annot-version=v1.0 ATGAGCAACAACAAGAGAGGAAGAGCTTGTGTGGTTGTGTTAGGAGACATTGGCCGCAGTCCTAGAATGCAATATCATGCCCTTTCTCTTGCCAATCAGG CAAATTTTGAAGTGGACATTGTCGGATATGGAGGTTCCACACCGCATTCTGCATTAGTGGAACACCATTCTATCAACGTTTACAGAATGAAGCCAATACT CCTTCAGGGCCTGCCAAAGGTGTTTAAACCTGTGGTTCTTCTACTTAAGCCTTTGATTCAGTTCGTTATGTTACTTTGGTTTCTCTGCATCAAAATCAAA CGACCAGATGTTTTCCTGGTTCAGAATCCACCATCTGTTCCGACCTTGATGGCAGTGAAATGGGCAAGCTGGCTACGGAATTCCGCTTTCATAATTGACT GGCACAACTTTGGATACACCTTGATGGCTCTATCTGTCGGAAGAAATAGTGGATTCGTTGCCGTATATCGTTGGTTTGAGCAGCATTTTGGTAAGATGGC TAATGGTGCACTGTGTGTAACAAAAGCAATGCAACATGAATTGGCTCAGAACTGGGGAATTAATGCCACAGTTCTATACGATAAGCCTCCAGAGTTTTTT CATCCTACTCCATTGGAAGAAAAACACAAGGTGTTGTTTTGCAGGTTGGATAAAAGTATCATTCAACTCCCTGGCATCCAAGATTGTGTTAGCTTTGAAA AAACAGCATTAGAAAATGAGTCTCTATTTACCACAGTGACTGAAGGTCATATTATTCCTAAACCAAATCAACCTGCACTTGTTGTTAGCAGCACGAGCTG GACACCTGATGAAGATTTTGGTATTCTGTTGGAAGCTGCTGTTATGTATGACAGACGGGTTACTGCAATCTTGAATGAAAATGATAATGTTGACGCTGAA GTTCTTTGGGAAGAAATGTCTCGTGGAAAAGAGATTATCTACCCCAGACTATTATTTGTTATTACAGGTAAAGGGCCCGAGAAAGAGAAGTATGAAGAGA AGATAAAGCGCTTGAGGCTGAAGCATGTTGCATTTCGTACAATGTGGTTGTCAGCTGAGGACTATCCTCTACTTCTTGGTTCTGCTGATCTTGGTGTGTG CTTGCACACTTCATCATCAGGATTGGATCTTCCGATGAAGGTGGTTGATATGTTTGGTTGTGGACTACCTGTTTGTGCCGTTGCATACTCCTGCATTCAT GAACTGGTAAAAGTTGGGGAAAATGGACTACTCTTTTCATCATCATCGGAGCTAGCTGATCAACTACTGATGTTGTTTGAAGGGTTTCCTAGTAAATGCA ACACACTGGCTTCATTGAGAAATGGGGCAACTGAAGCTGGGTCTTCAAGATGGGTTTCTGAATGGGAGGAACATGCTAAGCCATTGATACTGCAGGCAAG TCTCAGCATTACAAAATCTTGCTTTCCCTTTCTGATTTTATTCCTAATTGGTGTCGAGTTCCATGAAGCTTCAGACTCTACTAGTTTCATATCACTAGAA CTAGCATGA
AA sequence Show only first row Show all	>Lus10026065 pacid=23173139 polypeptide=Lus10026065 locus=Lus10026065.g ID=Lus10026065.BGIv1.0 annot-version=v1.0 MSNNKRGRACVVVLGDIGRSPRMQYHALSLANQANFEVDIVGYGGSTPHSALVEHHSINVYRMKPILLQGLPKVFKPVVLLLKPLIQFVMLLWFLCIKIK RPDVFLVQNPPSVPTLMAVKWASWLRNSAFIIDWHNFGYTLMALSVGRNSGFVAVYRWFEQHFGKMANGALCVTKAMQHELAQNWGINATVLYDKPPEFF HPTPLEEKHKVLFCRLDKSIIQLPGIQDCVSFEKTALENESLFTTVTEGHIIPKPNQPALVVSSTSWTPDEDFGILLEAAVMYDRRVTAILNENDNVDAE VLWEEMSRGKEIIYPRLLFVITGKGPEKEKYEEKIKRLRLKHVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVAYSCIH ELVKVGENGLLFSSSSELADQLLMLFEGFPSKCNTLASLRNGATEAGSSRWVSEWEEHAKPLILQASLSITKSCFPFLILFLIGVEFHEASDSTSFISLE LA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	1.0	0.8860
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	2.8	0.8067
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	3.2	0.8107
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	4.5	0.8401
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	4.6	0.8199
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	5.3	0.7778
AT5G17620			unknown protein		Lus10001340 [exp]	7.5	0.8143
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	7.7	0.7760
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	7.9	0.7471
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10017548 [exp]	8.8	0.7813

Compare expression of checked genes

Lus10026065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.