Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54260 461 / 1e-162 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT5G58600 285 / 2e-93 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 276 / 2e-90 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 276 / 6e-90 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G31110 271 / 2e-88 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 270 / 2e-86 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 268 / 3e-86 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G30900 265 / 7e-86 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G01360 260 / 3e-83 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 258 / 1e-82 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014358 [exp] 657 / 0 AT3G54260 466 / 1e-164 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Lus10027813 [exp] 278 / 3e-90 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10033617 [exp] 274 / 2e-89 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10005042 [exp] 271 / 1e-87 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007497 [exp] 271 / 3e-87 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10000988 [exp] 267 / 7e-87 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10002430 [exp] 271 / 8e-87 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021066 [exp] 274 / 2e-86 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 270 / 2e-86 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020900 [exp] 538 / 0 AT3G54260 495 / 1e-175 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Potri.001G278300 [exp] 299 / 5e-99 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.009G072800 [exp] 296 / 9e-98 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.019G090000 [exp] 277 / 9e-90 AT3G12060 290 / 3e-92 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) Potri.011G106200 [exp] 274 / 2e-89 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.016G119100 [exp] 275 / 3e-89 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.002G195800 [exp] 278 / 6e-89 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.001G376700 [exp] 268 / 1e-86 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 270 / 2e-86 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.008G069900 [exp] 269 / 5e-86 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10026066 pacid=23173257 polypeptide=Lus10026066 locus=Lus10026066.g ID=Lus10026066.BGIv1.0 annot-version=v1.0 ATGGCTGAAACAATCACCAACATTTTGATCTTCTTCTTGTTGTCCACAGTCAGTCTGTCCTTGTCGTTCGATGTAGAGGATGGATGGAGGAGCCATGACT TCTTCTCATCGTCGTCATCTAGTAAACAGAGGAAGCAGAGTGGGTGTGAGTTAAGTTCAGGGAAATGGGTTTACGACCATACTTACCCGCTTTACGACTC CAACTCGTGTCCTTACCTTACCACCGCCGTCACCTGCCAGAGGAACGGCCGCCCTGATTCCGACTACCAGAAGTGGAGGTGGCAGCCTCATGCTTGCTCT GTTCCAAGGTTTGATGCTCTAAAGTTTTTGGGGAAAATGAGGAGGAAAAGAATAATGCTGGTGGGGGATTCGATAATGAGGAACCAATGGGAATCTCTGG TGTGCTTGGTCCAAGGAGTTATTCCAACTGGTCGTAAGATGGTCTCATATAATGGTCCAACTATGGCCTTTCGTGCTATGGACTATGATGCAACAATAGA GTTCAGCTGGGCACCCTTGCTGGTGGAGCTAAAGAAAGGAGACAAGAACAAGAGGATTCTCCACCTTGACTTGATTGAAGAGAATGCTAGATACTGGAGA AATGTTGATGTTCTCGTCTTCGATTCCGCTCATTGGTGGACTCACTCCGAGGCTTCCAGCTCGTGGGACTATTACATGGAAGGGAACACAATGTTCCAAA CCATGAACCCAATGCTTGCATACCACAAGGGACTCACCACTTGGTCCAAATGGATTGACCTGAATCTCAACCCGACCAAGACCAAAGTCATATTCCGGAC CATGTCCCCGCGGCACAACAAGGAGAACGGCTGGAAGTGCTACAACCAGAAGCAGCCATTGGCGTACCTGAGCCACAATCACGAGCCGGAGCCGGTGGTG GTGGTGAAGGAAGTGGTGAGGAGGATGAGGTTCCCAGTGTACATACATGATATCACTTCGATGTCTGCTCTCAGAAGGGACGGCCATCCTTCGGTGTACA GGAAGGTCATAAGTCAGGCGGAGAAGAACAAGAAGAAGGATGAGATTCGAAAGGATTTGTCGTCGGATTGCAGCCACTGGTGTCTCCCTGGTGTGCCTGA TATCTGGAATGAAATGCTCGCTTCTCTGCTTTAG
AA sequence Show only first row Show all	>Lus10026066 pacid=23173257 polypeptide=Lus10026066 locus=Lus10026066.g ID=Lus10026066.BGIv1.0 annot-version=v1.0 MAETITNILIFFLLSTVSLSLSFDVEDGWRSHDFFSSSSSSKQRKQSGCELSSGKWVYDHTYPLYDSNSCPYLTTAVTCQRNGRPDSDYQKWRWQPHACS VPRFDALKFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGRKMVSYNGPTMAFRAMDYDATIEFSWAPLLVELKKGDKNKRILHLDLIEENARYWR NVDVLVFDSAHWWTHSEASSSWDYYMEGNTMFQTMNPMLAYHKGLTTWSKWIDLNLNPTKTKVIFRTMSPRHNKENGWKCYNQKQPLAYLSHNHEPEPVV VVKEVVRRMRFPVYIHDITSMSALRRDGHPSVYRKVISQAEKNKKKDEIRKDLSSDCSHWCLPGVPDIWNEMLASLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	0	1
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	1.0	0.9394
AT1G69160			unknown protein		Lus10019172 [exp]	1.4	0.8981
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	4.0	0.8705
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	4.2	0.8631
AT2G40820			unknown protein		Lus10038998 [exp]	4.2	0.8851
AT4G23720			Protein of unknown function (D...		Lus10017546 [exp]	4.7	0.8228
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	5.7	0.8384
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	5.7	0.8549
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	7.1	0.8685
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	9.5	0.8463

Compare expression of checked genes

Lus10026066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.