Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 76 / 1e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 65 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 62 / 1e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 61 / 3e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 60 / 3e-10 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31690 54 / 4e-08 B3 REM9 Transcriptional factor B3 family protein (.1) AT1G49480 52 / 1e-07 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G53310 49 / 7e-07 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 49 / 1e-06 B3 REM6 Transcriptional factor B3 family protein (.1) AT4G31680 42 / 0.0002 B3 REM8 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014359 [exp] 431 / 1e-154 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 108 / 3e-28 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 98 / 1e-23 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10025534 [exp] 94 / 6e-23 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 95 / 2e-22 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 91 / 7e-21 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 86 / 1e-19 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 82 / 2e-19 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 84 / 5e-19 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035700 [exp] 79 / 1e-17 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 81 / 3e-17 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 76 / 2e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 74 / 9e-15 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 73 / 1e-14 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 68 / 1e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 65 / 5e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 60 / 3e-10 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 54 / 3e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 52 / 2e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026067 pacid=23173089 polypeptide=Lus10026067 locus=Lus10026067.g ID=Lus10026067.BGIv1.0 annot-version=v1.0 ATGAAGAGCAAGACCACAGATTGTGGAGATGTATTTGATTCCGGAAAGCCACATTTCTTCAAGGTCATCCTTCAAGAAACAATTACAGACAAAAGGCTCG CCATTCCAGAGATGTTTGTAAAGAAACATGGAGCAGCCTTGTCTAGCCCCGTTTCCCTCAAGCTCCCGGGCGGAACGACATGGAAAATCGACTTGTTGAT AGAGATATGCAGCAGCAGCAGCAGAACTAGTGCTAACAAGAACATATTCTGGCTGTGTAATGAAACATGGCATAAGTTTGCACAACATTACTCCTTGAAA CACGGCCACTCTTTGGTCTTCCAGTACGAGGGCGGATCTCTCTTCACCATAGCCATCTTCGACGTTCTCAAAGGTCCAGAGATCCAATACCCAGAAAGCA TAACAAGCAGCAGCAGCAGTACTAATGAGTTTGTGTCCAAGTACCCGTTTTTCAAAGTTGTGATTAGCCAGCTTCATTTGGCGAAAAACAACATGTGGGT GCCTAGGGAGTTTTCCAAGAGGTACATGATGATGAAGACAAGCAAAGTGGAGGTGAAGGTGCAGGTCGGGGAAGAGTGGTGGAAAGTGAATGCTTGCAGA TACAAAGCTGGAAATGGAATATATAATGTGCAGATGAATGGGGGATTTGCTTGCTTTGCTAAGGCAAACTCTATTGAAGTTGGAGATGTTTGCTTCTTTG AGCTGCTTAGTGCTAAGGAGGGTGGTGATGGGCTGTCTTTCAAGGTCACCATTGTTCGTCAAGGTGGGAAAGAAAGGAAGTAG
AA sequence Show only first row Show all	>Lus10026067 pacid=23173089 polypeptide=Lus10026067 locus=Lus10026067.g ID=Lus10026067.BGIv1.0 annot-version=v1.0 MKSKTTDCGDVFDSGKPHFFKVILQETITDKRLAIPEMFVKKHGAALSSPVSLKLPGGTTWKIDLLIEICSSSSRTSANKNIFWLCNETWHKFAQHYSLK HGHSLVFQYEGGSLFTIAIFDVLKGPEIQYPESITSSSSSTNEFVSKYPFFKVVISQLHLAKNNMWVPREFSKRYMMMKTSKVEVKVQVGEEWWKVNACR YKAGNGIYNVQMNGGFACFAKANSIEVGDVCFFELLSAKEGGDGLSFKVTIVRQGGKERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	0	1
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	1.4	0.8820
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	2.8	0.8541
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	3.9	0.8246
AT4G37810			unknown protein		Lus10011591 [exp]	4.2	0.8066
AT5G02440			unknown protein		Lus10023770 [exp]	4.5	0.8163
AT2G37960			unknown protein		Lus10027749 [exp]	10.4	0.7669
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	15.0	0.7836
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	18.2	0.7762
					Lus10007510 [exp]	18.5	0.7641
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	20.2	0.7653

Compare expression of checked genes

Lus10026067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.