Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50520 310 / 1e-106 Phosphoglycerate mutase family protein (.1) AT5G04120 227 / 5e-74 Phosphoglycerate mutase family protein (.1) AT1G22170 63 / 4e-11 Phosphoglycerate mutase family protein (.1) AT5G22620 57 / 6e-09 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT1G78050 54 / 4e-08 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT1G07110 49 / 3e-06 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014360 [exp] 509 / 0 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10033465 [exp] 55 / 2e-08 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10020910 [exp] 55 / 3e-08 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1) Lus10015442 [exp] 52 / 3e-07 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10020553 [exp] 48 / 5e-06 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10026380 [exp] 47 / 1e-05 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 47 / 2e-05 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 47 / 2e-05 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10042278 [exp] 47 / 2e-05 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040700 [exp] 320 / 7e-110 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.011G052200 [exp] 54 / 3e-08 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.002G093300 [exp] 54 / 5e-08 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G168000 [exp] 53 / 1e-07 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.009G073800 [exp] 53 / 1e-07 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.005G078100 [exp] 52 / 1e-07 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.001G279100 [exp] 49 / 3e-06 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.004G187700 [exp] 48 / 6e-06 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10026068 pacid=23173224 polypeptide=Lus10026068 locus=Lus10026068.g ID=Lus10026068.BGIv1.0 annot-version=v1.0 ATGACCACACTGTGCACTTGGCGCACTATACAACCGCTGCCCTCAAAAAGTCGTCCCGACCGTTCACTGAAGCTTCCTCGGCTCCTGAAACTCTCCGTCG CCGGTTGCATCAAAGGTCACATCCCCCCGCTCCTGTTTATCCGCCGTGGCCTCCGATCCGATCGGCTATCGGCTCTCTCCGTCAAAACCTTCGAGCAGGA GCTGGAATCCATGTCAGAGTCCAACTCCATTTCCAACTCTGCTCAGCCAACTTATACGGAGATTGTCGTCGTCCGTCACGGCGAAACGGAGTGGAATGCT GGTAGAAAGATTCAGGGACATATCGATGTTGATTTGAATGAAGCTGGCAGAAAGCAGGCGGCTTTGGTGGCTGAACGATTATCCAATGAACCCAAAATCT CTGCTGTGTATTCTTCCGACTTGAAACGAGCTTTTGATACCGCACAGGCAATTGCTGATAGGTGTGGTGGTCTAGAGGTCATCAAGGAGCTAGGCCTGCG AGAAAGACATTTAGGGGATCTTCAAGGCCTTGCTTTAAGTGCAGCTTCCAAAGTTTGTCCACAGGCCTATGAGGCATTTTTATCCCATGACTCCAGCCGA GATATTCCTGGTGGTGGTGAAAGTCTAGATAAACTTTATGAGCGTTGCACATCTTCATTGCAAAGGATTGCTGCGAAGCATAGAGGGGAACGAGTAGTTG TGGTGAGTCATGGAGGTACCATAAGAGCACTACACAAGAGGGCTTGCCCGGATAAAAGGCCTGGGACGGTACTGAATACTTCTGTGCACATCTTTCACTT ATCAGATGAAGACCAATGGAGCATAAAATCTTGGGGCGACGTTAGCCATCTCAACCAAACAGGATTCCTCAAGTCTGGTTTTGGGGGTGACAGAACCTCT GGTTAG
AA sequence Show only first row Show all	>Lus10026068 pacid=23173224 polypeptide=Lus10026068 locus=Lus10026068.g ID=Lus10026068.BGIv1.0 annot-version=v1.0 MTTLCTWRTIQPLPSKSRPDRSLKLPRLLKLSVAGCIKGHIPPLLFIRRGLRSDRLSALSVKTFEQELESMSESNSISNSAQPTYTEIVVVRHGETEWNA GRKIQGHIDVDLNEAGRKQAALVAERLSNEPKISAVYSSDLKRAFDTAQAIADRCGGLEVIKELGLRERHLGDLQGLALSAASKVCPQAYEAFLSHDSSR DIPGGGESLDKLYERCTSSLQRIAAKHRGERVVVVSHGGTIRALHKRACPDKRPGTVLNTSVHIFHLSDEDQWSIKSWGDVSHLNQTGFLKSGFGGDRTS G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50520			Phosphoglycerate mutase family...		Lus10026068 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	10.1	0.8306
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	16.2	0.8452
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10000795 [exp]	32.4	0.7839
AT1G07040			unknown protein		Lus10013272 [exp]	49.3	0.8188
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	72.4	0.7827
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	128.9	0.7905
AT1G65020			unknown protein		Lus10024543 [exp]	130.7	0.7877
AT1G31940			unknown protein		Lus10012117 [exp]	139.1	0.7841
AT1G53400			Ubiquitin domain-containing pr...		Lus10015233 [exp]	188.1	0.7526
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	189.2	0.7618

Compare expression of checked genes

Lus10026068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.