Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80870 575 / 0 Protein kinase superfamily protein (.1) AT2G45590 276 / 9e-83 Protein kinase superfamily protein (.1) AT5G51770 225 / 2e-64 Protein kinase superfamily protein (.1) AT5G15730 154 / 1e-40 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G58690 149 / 4e-39 Protein kinase superfamily protein (.1) AT4G25390 150 / 1e-38 Protein kinase superfamily protein (.1.2) AT3G19300 148 / 2e-37 Protein kinase superfamily protein (.1) AT1G80640 141 / 8e-37 Protein kinase superfamily protein (.1.2) AT5G06740 146 / 1e-36 Concanavalin A-like lectin protein kinase family protein (.1) AT1G49730 145 / 1e-36 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014361 [exp] 895 / 0 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10041395 [exp] 280 / 3e-84 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10036533 [exp] 179 / 1e-48 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10027393 [exp] 169 / 3e-44 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031679 [exp] 151 / 6e-41 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 150 / 3e-39 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 150 / 4e-39 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10034445 [exp] 153 / 2e-38 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 151 / 1e-37 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183100 [exp] 652 / 0 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 617 / 0 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 286 / 5e-87 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 241 / 4e-70 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G072900 [exp] 159 / 4e-41 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.018G132900 [exp] 150 / 1e-39 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.009G100400 [exp] 153 / 6e-39 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 151 / 3e-38 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G071300 [exp] 147 / 4e-38 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.005G252000 [exp] 144 / 3e-37 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026069 pacid=23173299 polypeptide=Lus10026069 locus=Lus10026069.g ID=Lus10026069.BGIv1.0 annot-version=v1.0 ATGCCTTCCAGAGCCTTACTGTCCTCGCCGCCGTTCGCCGACGACCACTTCCGACCTCGACCGACCTTCCCAACAAAAAGCAAGTTCCTTTTCCTATCCC TCACAATCTCCGCCACTGCAATCATCATCCTCACCCTCCTCTACTTCCTCTACCACCTCTGCCATTCCTTCCTCCTCCAACTATACCGCTCCGGCGGCCA AGTTCGCACAATCCCCTTCGACGCTCCTCTCAACAAGCTCAAGCGCTTCACCTACTCGGAACTCAAGCTCGCCACCAACGACTTCCACGACTCTTCCGTC ATCGGCAGGGGGGGATCCGCCACCGTGTTCCGCGCCATTGCCAAAGACGGGAAGCTCTACGCCGTCAAGCGCCTCGACGGCGACCTCACTCTCCACTCTG AGCAGGAGTTCCAGAACGAGCTCCAGATCCTCGGCGGGTTGAAATCATCGCTTTTAGTCACGCTGTTAGGTTACTGCGTGGAGAAGAAGCACCGGCTGCT CGTTTACGAGTATATGCCGAACAAGAGCCTCCAGGAATTGCTGTTCGGAGAAGACGACGGCACCGGTAATGTTCTGAGCTGGGAGAGAAGGTTTCGCGTG ATTCTCGATGTTTCCAGGGCGTTGGAATTCCTCCACACGGGATGTGACCCTCCCGTGATTCATGGAGATGTTAAACCGAGTAATGTGCTACTCGATTTCG ATTTCAAAGCCAAAATCGCTGATTTCGGTCTGTCTCGGGTCAAAAGGGAAACCGAGTTGTTCAGTCAGGATCTTATGTGGAAGAGCCAGGATCTTTCTGG AACGTTGGATCCGAGCAACGAGGAGGTCGTCGATTTCGCCAGAGCTCTGCAAGCTTCGTCTTCTGGTAAAGGAGCTGCTGCTTGTAACTTCAATGGTGAA TTGAATTTCAATTCCGTGAAAGGGAAGGAGGTTCCTGGAGATGAGCACAGTAAGGAGCTGAATTGCGGTCAGGAGGAGGAGGAGCTCGAGGATAACGGTA AACAATGGGGGAAAGATTGGTGGTGGAGGCAAGACGGTAATGAAGAATTCTGCAGCAAAGATTACGTTATGGAGTGGATCGGCAGCCAGATTTCCCCTTC CTCAAACCCTAATTGGGAGGAGGAACAAGGTCAAGATCACAAATCAATCACTCCCGCCGCTGTCGTCGTAGCCGCTCATCTTCCGACGGCGGAAGCTCCT CCGTGCAATGGACTTGAATCGAAGAATGACAGTGTCAATGGAGGACGGGGGAAGAAGAACAGGAAAATGAAGGAATGGTGGAAGGAGGAGCACTTGGAGG AGATGAGCAAGAAAGGAAGTTTCCGCAGCAGCATCAATCGGCTGAAGGTCAATAACAACGTCCGTACAAAATTGAAGATTCGTTTCCATCGGCGGAAGAG ATCTTCATCATCGATGGAGAGGAAACAGGAAGACGAAGGAGAGTTCAGTTTCAGGTGCGGGTGGTGGAGGAAGAAGAAATCAAACAACCAGAACGGTAAT GATCAGCCTCAGGGGAGCGAAATGTGGAGCGGGGATCTGTTCAGCCGGGAGCTTAGCAGCACGACGACCAGCATGAGAGGGACATTGTGCTACGTTGCGC CGGAGCACGGCGGCGGCGCCGGAGTGTCGTGCGGCGGCGGCGGTGGTGGATACTTAATGGAGAAAGCAGATATATACAGCTTGGGAGTGTTGATTCTGGT GATTGTTTCAGGGAGACGGCCGTTACATGTGCTGGCTTCTCCGATGAAGCTGGAGAAGGCGAATTTGATAAGCTGGTGCAGGCAATTGGCTCATCAGGGT AGTAATGGCGACATATTGGAGATTGTGGATGAGAGGTTGAAGGAGGATTACAACAAGGAGGAAGCGAGTTTGTGTATAAACTTGGCGCTGATTTGCCTGC AGAAGATGCCGGAGCTCAGGCCGGAAATCGGTGACATTGTGAGGATACTGAAAGGGGAAATGGAGATTCCTCCGCTTCCGTTCGAGTTCTCGCCGTCTCC TCCTCCTCCATCAAAGTTGTTACTACACAAGTCCGGGAGAAAATACAGGGCTGCTACTACAGAGTAG
AA sequence Show only first row Show all	>Lus10026069 pacid=23173299 polypeptide=Lus10026069 locus=Lus10026069.g ID=Lus10026069.BGIv1.0 annot-version=v1.0 MPSRALLSSPPFADDHFRPRPTFPTKSKFLFLSLTISATAIIILTLLYFLYHLCHSFLLQLYRSGGQVRTIPFDAPLNKLKRFTYSELKLATNDFHDSSV IGRGGSATVFRAIAKDGKLYAVKRLDGDLTLHSEQEFQNELQILGGLKSSLLVTLLGYCVEKKHRLLVYEYMPNKSLQELLFGEDDGTGNVLSWERRFRV ILDVSRALEFLHTGCDPPVIHGDVKPSNVLLDFDFKAKIADFGLSRVKRETELFSQDLMWKSQDLSGTLDPSNEEVVDFARALQASSSGKGAAACNFNGE LNFNSVKGKEVPGDEHSKELNCGQEEEELEDNGKQWGKDWWWRQDGNEEFCSKDYVMEWIGSQISPSSNPNWEEEQGQDHKSITPAAVVVAAHLPTAEAP PCNGLESKNDSVNGGRGKKNRKMKEWWKEEHLEEMSKKGSFRSSINRLKVNNNVRTKLKIRFHRRKRSSSSMERKQEDEGEFSFRCGWWRKKKSNNQNGN DQPQGSEMWSGDLFSRELSSTTTSMRGTLCYVAPEHGGGAGVSCGGGGGGYLMEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLISWCRQLAHQG SNGDILEIVDERLKEDYNKEEASLCINLALICLQKMPELRPEIGDIVRILKGEMEIPPLPFEFSPSPPPPSKLLLHKSGRKYRAATTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	0	1
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	1.7	0.8756
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	2.8	0.8752
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	5.3	0.8237
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	6.9	0.7871
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	7.1	0.8395
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	8.1	0.8200
AT1G11915			unknown protein		Lus10038443 [exp]	9.5	0.8234
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	13.1	0.8143
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	13.5	0.8158
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	13.9	0.8151

Compare expression of checked genes

Lus10026069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.