Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 367 / 1e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 365 / 6e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 364 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 348 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 345 / 9e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 274 / 9e-91 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 255 / 2e-83 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 249 / 5e-81 CCR2, ATCCR2 cinnamoyl coa reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014363 [exp] 654 / 0 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 575 / 0 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 565 / 0 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 474 / 1e-165 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 421 / 2e-148 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 416 / 8e-147 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 389 / 4e-136 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 369 / 5e-121 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10019732 [exp] 329 / 1e-112 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057500 [exp] 438 / 2e-155 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 435 / 3e-154 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 420 / 3e-148 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 417 / 4e-147 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 400 / 3e-140 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G120200 [exp] 270 / 3e-89 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 267 / 4e-88 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G045000 [exp] 261 / 8e-86 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 260 / 2e-85 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 260 / 3e-85 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10026070 pacid=23173282 polypeptide=Lus10026070 locus=Lus10026070.g ID=Lus10026070.BGIv1.0 annot-version=v1.0 ATGAGCGGCGAAGGAAGAGTAGTATGTGTGACGGGCGGGTCGGGTTACATAGCCTCATGGATCATCAAGCTTCTCTTGGAACGCGGCTATACTGTCAATA CTACTGTTCGCGACCCAACTGATAAAACCAAGATTCAACACTTGCTTTCCCTCGATGGAGCGGGAGACAGGCTAAAGCTGTACAAAGCAGATCTTAGTGA AGATGGGTGTTTTGATTCTGCTGTGGAGGGATGCGAAGGAGTCTTCCATACTGCCTCCCCTGTTTTCTTTCATTCTACCAACCCACATGCAGATTTAATT GAACCTGCAGTGAAGGGCACACTCAGCGTTCTTAAAGCATGTGCAAAAGTTCCTTCTATCAAGAGAGTTGTTCTGACTGCTTCTATGGGTTCAGTGCTCT GGAATGGGAAGCCTCGTTCCCCTGGTGTTGTGGTTGATGAGACTTGGTTCTCTGATCCACAATTTTGCGAGAAGAAACAGCTTTGGTATATGCTTTCGAA AACTTTGGCCGAGGAGGCTTCCTGGAAATTTTCCAAAGAGAATGGCATTGATCTTGTTGCGATTAATCCAGGGTTCGTAATCGGTCCTTACCTGCAGCAA TCCATTAACTTAACGGTGGAGGAGGTTCTGAAGCTTGTAAATGGAACTCGAGAATTTCCAGGTGATATCTATAGATTTGTCGATGTCCGAGATGTGGCGA ACTCACATATCCTCGCGTTTGAGGTCCCATCAGCTAGTGGCAGATATTGTATAGTCGGAAGAACAGCACACTATAGCGAGGCTCTGGAGATTTTGCATGA GCACTATCCCAATCTACCAGTATTTGCAAAATGGGAAAATGACAAGACATCTCATCCAACATATGAGATTTCTCAAAAGAAGGCAAAAAGCTTGGGTCTC GAGTTTACTCCTCTGGAAGTGACTCTTAGGGATACTGTAGAATGCTTCAAGGAGAAGGGTCTTCTCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10026070 pacid=23173282 polypeptide=Lus10026070 locus=Lus10026070.g ID=Lus10026070.BGIv1.0 annot-version=v1.0 MSGEGRVVCVTGGSGYIASWIIKLLLERGYTVNTTVRDPTDKTKIQHLLSLDGAGDRLKLYKADLSEDGCFDSAVEGCEGVFHTASPVFFHSTNPHADLI EPAVKGTLSVLKACAKVPSIKRVVLTASMGSVLWNGKPRSPGVVVDETWFSDPQFCEKKQLWYMLSKTLAEEASWKFSKENGIDLVAINPGFVIGPYLQQ SINLTVEEVLKLVNGTREFPGDIYRFVDVRDVANSHILAFEVPSASGRYCIVGRTAHYSEALEILHEHYPNLPVFAKWENDKTSHPTYEISQKKAKSLGL EFTPLEVTLRDTVECFKEKGLLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	0	1
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	2.2	0.9132
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	2.6	0.8734
AT2G42760			unknown protein		Lus10005429 [exp]	6.7	0.8957
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	6.8	0.8980
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	8.4	0.8643
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	9.5	0.8646
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	11.4	0.8789
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	12.0	0.8731
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	12.2	0.8132
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	13.7	0.8858

Compare expression of checked genes

Lus10026070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.