Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30240 543 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014364 [exp] 1436 / 0 AT1G30240 591 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238000 [exp] 761 / 0 AT1G30240 602 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026071 pacid=23173117 polypeptide=Lus10026071 locus=Lus10026071.g ID=Lus10026071.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTGAAGAGCTTGACGGACATGGACGACCCGGAGCTGAAGCCTCGTATGCTCCGCAGTCTCCTTAAGGAAGACGTTCCGAATGAGAAGAAAC CCTTTGATAATCCTTCAAACCTTAAAAGGGTTGTCTCCCGGATTCAAACCCACGAGCTGCTCTCCGAGTGCTTCTCCGAAACAATGGACGAGAAGCTAAT TGGCCGGTGGAAGTCCGCCGTCGACGACTGGATCAATCGATTGTCGTCGCTGGTGTCTAATCTTAACATGCCAGATAAATCTTGGGCTGGTATATGCTTG CTGGGAGTAACAAGCCAAGAGTGCAGCTCTGAGCGTTTTGTGGCATCATACACCGTATGGTTTGACAAACTTCTAGTGTCCATGCAGTCATCTGCTGATT CTCAATTTATAAAGGTGGCTTCTTGTGCATCAATGTCAGATCTTATTACAAGGTTGGCTGGGTTCCCAAAGTTGAAGAAGGATGGGTTATCGTGTGCAGG GAAACTCATTCAACCTCTTCTCAAGATGCTGGATGAGGACTCTCCAGAGTCTGTGCAGGAAATGGCTCTGCGTATGTTATCCACAATTATTAATTTATTT CCTGCTTCTCTTCCTCGTTATTATGATAGTGTTGAAGCTGCAGTCGCATCTAGAATGTTTTCAGGAAATGGCAGTCTTAGTTTACAGAAGAAGTTTGCTT CTTCCCTGGCATTACTTCCAAAATCCAGAGGAGATGAAGAAAGTTGGCTCCTACTAATACGAAGGATTTTATTGTTGCTAAATGGTTATTTAACTAGTGT TTTCGATGGACTTGAAGAGGCAAGTAAATGGGAGGAGTCTGTGAAATTGTTGGTTCCTCCTGGGGAGGTTCCTCCACAAATGATATGGGGTCAAAAGTTG GTAGAAAGAGTCTCCGGAAAGGATAGATGGAGATCCAAGTTATCCTCTATATTATTATTGATGCACAGCTGTTCAATGATGCTTACCAATTCACACCCTA ACCAGGTACATGTTCCAGTTTGCTCTTTATTAGCCCTCGTGGAGAGGGTCTTGATGGTCCATGGTTCTTTGCCGAGTGCCACGTCCTTTGTAATTGCAGC TGAACAAGATTATGTGTGTTCAGAACTCCCGCTTCTGCATTCATACTGTCTAGAGCTCCTCTCTTCAGTAATAAAGGGCATGCGCAGTCAACTACTGCCA CATGCTGCATACATTGTCCGACTAGTTAAAGCGTATTTTAAACGTTGTCAACTACCACATCTACGGCAAAAGGTGTATGCAATTGCAAAGATGCTGCTCA TATCTATGGGTGTCGGTGTAGCAATCTATCTGGCACAAGATGTTGTCAACAATGCCCTCACTGATCTGACTTCTGGTGCTGATAATACAATCAATGGAAG ATTGAATGTGTCTTCTCAGGCCTGGTTGCAACCTTGTTCGAAAAAAAGAAAACACAGTGGTACAGATGACATCGAACAGCAGCAAAACTCAGTCGCAATG GAATTCCCATTAGTTGATTACAAGTCAGCTAGAGGTTCAGTCAAACTAGCTGCGGTTGATGCAATAGAAGCTCTTCTTACTGTGGGTGGTGCTCTTAGAT CCGAGTCATGGCGGTTAAGAATCGATAACTTGCTAATAAACATAGTGGAAAGTTGCTGTAGAGGTAGATGGGGTAATGATGGAAGGAGTTTCTCGTCGAA CGATCCAGATTTTCAACTAGCGGCATTGAAGGCACTTTTGGCATCTCTCCTTTCCCCAACTCGCTCTCGCCCTCCTCATTTAGCACAAAGTCTCGAGCTT TTTCGGCAAGGCAGACAAGAGATTGGAACAAGGATCTCTGACTTCTGCGCCCATGCTCTCTTAGCCTTGGAATTGCTTATACATCCTCGTGCATTGCCAT TGATAGATTCACTATCAAGTAACTCTCTCCACGGTTTCGAAGACCCTGCTGGTCAGAAGCCTAGCACGCCATTCCCCTTGAGCAATCACGAAGCAGAACA TGGTGGAAATTTCGATCTAAGTGATGACTTGCTGTACCAAAGTTGGATAGATAACTCTAATAAGGGAACCGAGAGCTCGATAGAAATTGTAGAAAGACAG ACAAATGTTGAAGAAAGAGAAACCCACTCAGCAGCCAGAGTTCAACCAGGCAATGCAAAAGCCGATACGAGGATATCCAGCAACGATGAAACAATGGTCG ATTTGGTACAGGCTACTAATGCAACAGTCCCGCAGGCCAATGAATTTGGTTCGGCAGGAGCTGCTGCTGATGTTTCGGCAGTTGACAAAGTGGAGGTAAC AAGAGAGAGGAGCTTAGACAATGCTGCTCGCCCAGTTGATCAGATTACTGGTACTGATGCTGTCATGGAGGAGAAAAGTGACGATCTTTATCTGAATAAA GGTGCAAGATTAGGCTCTCCAAAGAATAGGACAGCCACTGGCGAGGAATCGGATAATGAGTCGACGGATTCACTTCCGGAAATCGTCTTTGCTGACCCAG ATTCTGATTAG
AA sequence Show only first row Show all	>Lus10026071 pacid=23173117 polypeptide=Lus10026071 locus=Lus10026071.g ID=Lus10026071.BGIv1.0 annot-version=v1.0 MAALKSLTDMDDPELKPRMLRSLLKEDVPNEKKPFDNPSNLKRVVSRIQTHELLSECFSETMDEKLIGRWKSAVDDWINRLSSLVSNLNMPDKSWAGICL LGVTSQECSSERFVASYTVWFDKLLVSMQSSADSQFIKVASCASMSDLITRLAGFPKLKKDGLSCAGKLIQPLLKMLDEDSPESVQEMALRMLSTIINLF PASLPRYYDSVEAAVASRMFSGNGSLSLQKKFASSLALLPKSRGDEESWLLLIRRILLLLNGYLTSVFDGLEEASKWEESVKLLVPPGEVPPQMIWGQKL VERVSGKDRWRSKLSSILLLMHSCSMMLTNSHPNQVHVPVCSLLALVERVLMVHGSLPSATSFVIAAEQDYVCSELPLLHSYCLELLSSVIKGMRSQLLP HAAYIVRLVKAYFKRCQLPHLRQKVYAIAKMLLISMGVGVAIYLAQDVVNNALTDLTSGADNTINGRLNVSSQAWLQPCSKKRKHSGTDDIEQQQNSVAM EFPLVDYKSARGSVKLAAVDAIEALLTVGGALRSESWRLRIDNLLINIVESCCRGRWGNDGRSFSSNDPDFQLAALKALLASLLSPTRSRPPHLAQSLEL FRQGRQEIGTRISDFCAHALLALELLIHPRALPLIDSLSSNSLHGFEDPAGQKPSTPFPLSNHEAEHGGNFDLSDDLLYQSWIDNSNKGTESSIEIVERQ TNVEERETHSAARVQPGNAKADTRISSNDETMVDLVQATNATVPQANEFGSAGAAADVSAVDKVEVTRERSLDNAARPVDQITGTDAVMEEKSDDLYLNK GARLGSPKNRTATGEESDNESTDSLPEIVFADPDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30240			unknown protein		Lus10026071 [exp]	0	1
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	1.4	0.9387
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	2.6	0.9391
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	4.0	0.8991
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	4.5	0.9248
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	4.9	0.9298
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	7.4	0.9171
AT1G30240			unknown protein		Lus10014364 [exp]	7.5	0.9156
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	11.5	0.9068
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	11.6	0.8834
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	11.9	0.8665

Compare expression of checked genes

Lus10026071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.