Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 337 / 1e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 305 / 8e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 306 / 3e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 293 / 1e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 280 / 1e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 270 / 1e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 227 / 3e-69 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G68540 191 / 1e-55 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G42800 190 / 9e-55 M318, TT3, DFR dihydroflavonol 4-reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002300 [exp] 546 / 0 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 491 / 4e-172 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 479 / 3e-167 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 475 / 1e-165 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 337 / 8e-112 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 334 / 1e-110 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 321 / 7e-99 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10008668 [exp] 296 / 1e-95 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026152 [exp] 278 / 4e-90 AT5G19440 291 / 7e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057500 [exp] 361 / 3e-121 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 353 / 7e-118 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 340 / 6e-113 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 335 / 4e-111 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 326 / 2e-107 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 212 / 1e-63 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 208 / 4e-62 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G125400 [exp] 195 / 3e-57 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 193 / 1e-55 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G030700 [exp] 192 / 1e-55 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10026072 pacid=23173180 polypeptide=Lus10026072 locus=Lus10026072.g ID=Lus10026072.BGIv1.0 annot-version=v1.0 ATGATCGGCGAAGGAAGAGTAGTATGTGTGACGGGCGGGTCGGGTTACATAGCCTCATGGATCATCAAGCTTCTCTTGGAACGCGGCTATACTGTCAATA CCACTGTTCGCGACCCAACTGATAAAACCAAGATTCAACACTTGCTTTCCCTCGATGGAGCGGGAGAGAGGCTAAAGTTGTACAAAGCAGATCTTACTGA AGATGGGTGTTTTGATGCTGCTGTCGACGGATGCGAAGGAGTGTTCCATACTGCATCCCCTTGTTTCTTTCATTCTACAAACCCACAGGAAGATTTGATT GAACCTGCAGTGAAGGGCACACTCAGCGTTCTGAAATCATGTGCAAAAGTTCCTTCTGTCAAGAGAGTTGTTCTGACTTCTGCTATGGCTTCAGTGATCT GTAACGGGAGGCCTGTTTCTCCTGATGTTGTGATCGATGAGACTTGGTTCTCTGATCCTGAATTTTGTGAGAAGAACCAGCAATGGTACATGCTTTCAAA AACTTTGGCAGAACTGGCTGCCTGGAAATTTGCGGAAGAGAATGCGATTGATCTTGTAACGATTAACCCCGGATTCACAATTGGTCCTTTCCTACAGAAA TCTCCTGGTTTGACTGTTGAGGAGGTTCTCAGGATGATCAAAGCTGATAAAACCAAGACCCAACACTTACTTTCCCTCGACGGAGCTGGAGATAGGCTTC AATTACACAAAGCAAATCTTAATGAAGATGGTTGTTTTGATTCTGCTGTCGACGGATGCGAAGGCGTCTTCCATACTGCCTCTCCTTGCTTCTTTCAAAC TACCAACCCACAGGCAGATTTAATTGAACCCGCAGTGAAGGGCACACTCAGCGTTCTGAAATCATGTGCAAAAGTTCCTTCTATCAAGAGAGTTGTTCTG ACTGCTTCTATGGCTTCTGTAATCTGTAATGGGAGGCCTCTTTCCCCTGGTGTTGTGGTCGATGAGACTTGGTTCTCTGATCCTGAATTTTGTGAGAAGA ACCAGCATTGGTACATGCTTTCGAAAACTTTGGCGGAAGAGGCTGCCTGGAAATTTGCGAAAGAGAATGGGATTGATCTTGTAACGATTAACCCCGGATT CGTAATTGGTCCTTACCTACAGAAATCTCTTAATTTCACAGTGGAGGAGGTTCTCAGGATTATAAACGGAACACGAGAATTCCCAGGCGAAAGCTATAGA TTTGTTGATGTCCGAGATGTGGCGAATTCACATGTTCTAGCACTTGAGATCCCATCAGCAAGTGGGAGATATTGCGTAGTTGGAAGAATGGCTCACTATA CTGAGGTTCTGGAAATTTTGCATGAACATTACCCCAATTTACAAATAGCTGCAAAATGGGAAAGTGGCAAGACATCTCAGCCAACATGTAAGATATCTCA AGAGAAGGCTAAGAGTTTGGGCGTCGACTTCACTCCTCTCGAGGTAAGCTTCGGCTTGAACTATACAATCGGAGCAGTCACCGGCGGAAATGCAACCACC TTGGCCGTGCATGGTGTAGGTCCCTCTGTCATCACTTCCATCCTTGCAAAAATCTATAACATCTGGCGGCAAAGACCCGGCGCTCTTCCTGAAGCAACCT TCAAAGGGCTAGAATCGCTGACGGGGACTCCGTTGCAAATATGGTTGAAGTCGTACACAACAACCGACGACGATAAGCTGTTGAAATTGTTGGGAAGAAT AATAGACAGTATAATGATGCCAGAGGAAACTACGCCGGCTCTGCTCATCATCATCATTCTGGAATTATTAGCCGGTACATGA
AA sequence Show only first row Show all	>Lus10026072 pacid=23173180 polypeptide=Lus10026072 locus=Lus10026072.g ID=Lus10026072.BGIv1.0 annot-version=v1.0 MIGEGRVVCVTGGSGYIASWIIKLLLERGYTVNTTVRDPTDKTKIQHLLSLDGAGERLKLYKADLTEDGCFDAAVDGCEGVFHTASPCFFHSTNPQEDLI EPAVKGTLSVLKSCAKVPSVKRVVLTSAMASVICNGRPVSPDVVIDETWFSDPEFCEKNQQWYMLSKTLAELAAWKFAEENAIDLVTINPGFTIGPFLQK SPGLTVEEVLRMIKADKTKTQHLLSLDGAGDRLQLHKANLNEDGCFDSAVDGCEGVFHTASPCFFQTTNPQADLIEPAVKGTLSVLKSCAKVPSIKRVVL TASMASVICNGRPLSPGVVVDETWFSDPEFCEKNQHWYMLSKTLAEEAAWKFAKENGIDLVTINPGFVIGPYLQKSLNFTVEEVLRIINGTREFPGESYR FVDVRDVANSHVLALEIPSASGRYCVVGRMAHYTEVLEILHEHYPNLQIAAKWESGKTSQPTCKISQEKAKSLGVDFTPLEVSFGLNYTIGAVTGGNATT LAVHGVGPSVITSILAKIYNIWRQRPGALPEATFKGLESLTGTPLQIWLKSYTTTDDDKLLKLLGRIIDSIMMPEETTPALLIIIILELLAGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026072 [exp]	0	1
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	7.3	0.9352
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	8.4	0.9374
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	9.1	0.9409
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10007065 [exp]	11.5	0.9308
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	22.1	0.9256
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	25.0	0.9321
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	28.8	0.9322
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	30.4	0.9217
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	37.2	0.9249
AT4G19160			unknown protein		Lus10025855 [exp]	38.7	0.9240

Compare expression of checked genes

Lus10026072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.