Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 393 / 4e-137 SAG12 senescence-associated gene 12 (.1) AT3G48340 377 / 9e-131 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G50260 367 / 8e-127 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 370 / 1e-126 Granulin repeat cysteine protease family protein (.1) AT3G48350 352 / 8e-121 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G35350 350 / 7e-120 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 352 / 2e-119 Granulin repeat cysteine protease family protein (.1) AT2G27420 343 / 3e-117 Cysteine proteinases superfamily protein (.1) AT3G49340 342 / 6e-117 Cysteine proteinases superfamily protein (.1) AT1G47128 346 / 7e-117 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002301 [exp] 686 / 0 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 670 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 662 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10026362 [exp] 661 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 660 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 657 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 654 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10042295 [exp] 653 / 0 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10028501 [exp] 652 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G089100 [exp] 546 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 546 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 539 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 539 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 539 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 536 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 494 / 4e-177 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 473 / 1e-169 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 466 / 1e-166 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 466 / 8e-166 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10026073 pacid=23173174 polypeptide=Lus10026073 locus=Lus10026073.g ID=Lus10026073.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGAGTAGCAAATTCATTCTCCTGGCTTCCATCTTCGTATTGGGAGCTTTGGCTTCTCATGCCATGGCGCGCTATACCCTTCCCGAAGCTG CCGTACGCCTCAGGTATGAACAGTGGATGACTCGTTATGGCCGAGTCTACGATAGTCCTAGTGAAATGGAGGCTCGCTACCAGATCTTCAAACACAATGT AGCCTTCATCGACTCTTCTAATGCTGATGGAAACAAATCTTACAAGCTTGGAGTTAATCAGTTTGCTGATTTGACTAACGACGAGTTCAAAGCCTCGAGA AACGGGTTCAAGGGACACATGTGCTCTCCGCAACATGGACCTTTTAGGTATGAAAATGTGAGCGCGGTTCCAACGACCATGGACTGGAGGAAGAAGGGAG CTGTCACTCCTATCAAAGATCAAGGTCAATGCGGAAGCTGCTGGGCGTTTTCGGCCGTGGGAGCAATGGAAGGAATTCACCAGCTCAGTACGGGGAAATT GGTGTCCCTTTCGGAGCAAGAATTGGTTGACTGTGACACCAAGGGAGAGGACCAAGGATGCAACGGCGGGTTGATGGATGATGCATTCAAGTTCATCATT CAAAATAAGGGATTGACCACCGAGACCAACTACCCTTATGACGCTGCTGACGGAACCTGCAATGCTAACAAAGAAGGCAGCAGTGCAGCCACGATTAAGG GCTACGAAGATGTACCAGCCAACGACGAGGCCGCATTGATGAAGGCTGTAGCAAGCCAACCGATCGCAGTAGCAATTGATGCTGGTGATTCATCGTTCCA ATTCTACTCGAGTGGAGTATTCACGGGAGAATGCGGGACTGAGCTAGACCACGGAGTGACAGCAGTTGGGTATGGAGAGAGCGGTGGGAAGAAATACTGG TTGGTGAAGAATTCATGGGGAGCTCAGTGGGGTGAAGCCGGATATATACGGATGGAGAAAGACATCAGTGCTAAAGAAGGCCTATGCGGAATTGCGATGC AGGCTTCCTATCCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10026073 pacid=23173174 polypeptide=Lus10026073 locus=Lus10026073.g ID=Lus10026073.BGIv1.0 annot-version=v1.0 MAAMSSKFILLASIFVLGALASHAMARYTLPEAAVRLRYEQWMTRYGRVYDSPSEMEARYQIFKHNVAFIDSSNADGNKSYKLGVNQFADLTNDEFKASR NGFKGHMCSPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCNGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAATIKGYEDVPANDEAALMKAVASQPIAVAIDAGDSSFQFYSSGVFTGECGTELDHGVTAVGYGESGGKKYW LVKNSWGAQWGEAGYIRMEKDISAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016210 [exp]	3.3	0.7485
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	8.7	0.6859
					Lus10003489 [exp]	13.9	0.6510
					Lus10019938 [exp]	34.3	0.6344
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	36.1	0.6545
AT1G12150			Plant protein of unknown funct...		Lus10038751 [exp]	47.9	0.5839
AT2G26975			Ctr copper transporter family ...		Lus10017205 [exp]	62.5	0.6085
					Lus10013098 [exp]	69.7	0.5934
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	76.2	0.5762
AT5G20140			SOUL heme-binding family prote...		Lus10019445 [exp]	159.8	0.5685

Compare expression of checked genes

Lus10026073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.