Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002304 [exp] 114 / 2e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026075 pacid=23173108 polypeptide=Lus10026075 locus=Lus10026075.g ID=Lus10026075.BGIv1.0 annot-version=v1.0 ATGTTCATCGGCATGTTTCTCGCCGTGGCCGGACAGTTTGGTGGTCGTGTCCCGGCGGCAAGACTTGATTTCGTATCGCCGCCGTGCACCAAGAATTCGA TATCCAGCCCTGATGTGGCGGTAAGCGTGGCAAAAGTGGTAGATTATGTGGTGCAGTACACGTCCACCGTAGCCAGCTATACGTTACGCCACCAAGTGAA GACCGGCGACGCTACCTGCTACGGCTACGCTTATTTGTACGATTTTAGAGAGAAAAATGAATTAGAGAGAATTGGAATCGTTGAATTATTCGAGGAGAGG AGTTCAGTATATATAATCATCAGCATCCATTCTCAGCTCTACTACAGTATTACCGAAAAGCAGAAATACACAGAAGTAAAAACACGTGTCACAGCACGGT ACGCAGCGGTAAAACAACAGAGCGGGCTCCTATCTGAATTGCAAATGCAGCGCCTTAATGATAACCAAGCTCAAGTCTACACCGACTATTGTTACTTGAC GTATGGTCCTACTCCGGTTTAA
AA sequence Show only first row Show all	>Lus10026075 pacid=23173108 polypeptide=Lus10026075 locus=Lus10026075.g ID=Lus10026075.BGIv1.0 annot-version=v1.0 MFIGMFLAVAGQFGGRVPAARLDFVSPPCTKNSISSPDVAVSVAKVVDYVVQYTSTVASYTLRHQVKTGDATCYGYAYLYDFREKNELERIGIVELFEER SSVYIIISIHSQLYYSITEKQKYTEVKTRVTARYAAVKQQSGLLSELQMQRLNDNQAQVYTDYCYLTYGPTPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026075 [exp]	0	1
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	4.5	0.8880
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	5.3	0.9069
AT2G37240			Thioredoxin superfamily protei...		Lus10019900 [exp]	5.5	0.8659
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	6.6	0.8653
AT5G01660			unknown protein		Lus10002863 [exp]	11.2	0.8169
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	14.8	0.8648
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	17.9	0.8558
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024425 [exp]	19.1	0.7931
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	19.6	0.8520
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	21.0	0.8393

Compare expression of checked genes

Lus10026075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.