Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 585 / 0 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 570 / 0 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 514 / 6e-176 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G48670 367 / 2e-118 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 332 / 3e-105 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 301 / 2e-92 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 236 / 2e-69 XH/XS domain-containing protein (.1) AT4G01180 224 / 2e-65 XH/XS domain-containing protein (.1) AT4G01780 170 / 3e-46 XH/XS domain-containing protein (.1) AT3G29375 150 / 6e-40 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037986 [exp] 719 / 0 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 698 / 0 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002702 [exp] 418 / 3e-138 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 415 / 4e-137 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 322 / 1e-99 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002305 [exp] 298 / 4e-98 AT3G48670 161 / 1e-46 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037987 [exp] 280 / 4e-85 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10032933 [exp] 189 / 2e-53 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000949 [exp] 188 / 2e-51 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 642 / 0 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 428 / 8e-141 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 391 / 2e-127 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 169 / 6e-46 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.008G024500 [exp] 43 / 0.001 AT3G22430 127 / 1e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10026076 pacid=23173145 polypeptide=Lus10026076 locus=Lus10026076.g ID=Lus10026076.BGIv1.0 annot-version=v1.0 ATGGACACGAATCGTGAGGAACTGCCAGACAACAATGACTCTGACATCAGTGAGTCAGAAATCGATGACTACGTTGACGGGCCATACGAGCGTTTGAGAT CTGGAGAACTTAAAGTGAAGGTAAATGGCAACCTACGCTGTCCATTCTGTGCTGGGAAGAAGAAGCAAGACTACGATAAGTACAATCACTTGCTCCAACA TGCTTCTGGTGTAGCCAAAGGATCCGCCACCAGGAGAGGGAAACAGAAGGCTAACCATCTTGCACTGGCCAAGTATCTGCAAATTGATTTAGCTGATGAA GCGGACGAAACAGTCACTAGGGTGTTACCACAACCCCCTAAACAATCTCCAAATGATGAGGATCTACTTGTATGGCCATGGATGGGGATTGTGGTGAATG TATCGGTGGAGTCTCAAGTGCTGGACGATGGTTATTGGTTAGAAAAGTTTTCGAAGTATAACCCTGTTGATGTGCATGTATTGCCTGATGAAGATTGCCT GAAAGCTATAGTTGTAATGAAGTTTAGCAGTGATTGGAATGGATACACCAATGCATCAGAGTTTGAGAAGTCTTTTGTGAGCCAACGTTGTGGTAAGAAG GACTGGAATGGTCATGACAAGGATGATCCTGGCTCAAACATTTATGGTTGGACTGCATATCGAGACGACTATGAATCTGAAGGTCAACTTGGAGAGTATC TTAGGAAAGAAGGCCAGCTCAAAACGGTGTCTGGTTTTTTCCAAGAAACTGTTGAAAGTAGAAATACTGTTGTTGCAAGCCTGACCGAGCAAATAGCTAA AACCACTCAAAATCTGGATGAGATACAACAGCAGTATAACAAGGAGGCTATGACTTTCAGCAGAGCAATTGAAGAGAAGGATCGTTTACAGCTTGCTTAT GTTGAAGAGACAAGGAAGCTGCAGCGAGCTTCACGAGAAGATATTCAAAGGATCTTAGCTGAACAGGAAAGGTTGAACAGTGAAGTAGAAAAATGGGCTA AGAAAATTGAACGTTGGAGTAAAGAATTGAACAAGCGGGAAGCACTGACAGATCGTGAGAGGCAAAGGCTTGAAGAAGAAAGGAAAAAGAACGCAGTGGT AAATAAGTCACTGCAATTGGCATCCTTGGAGCAGCAGAAGGCTGATGAGAACCTCTTGAGACTGGCTGAAATGCATCAGAAAGAGAAGGAAGAAGCCTAC AATAAGATCATTCAGCTGGAGAAACAATTGGAGGTCAAGCAAAAGCTGGAAATGGAAATTCAAGAGTTGAAAGGGAAACTGAAAGTGCTGAAGCATCTGG AGGACCAAGATGATGAAGCAGTTAAGAAAGCTATGAAAGACATGGACGATGAGTTGGAGGAAAAAATAGAAAAGCTGACTGATGAGGAAACTGTAATGAA CGTTCTCATGATCAAAGACCGTCAGAGTAATGAAGAGGTTCAGGAAGCACGCAAAGCAATGCTACAGGGTTTGAAGAATCTGTCATCTGGCAGCAAATCT AAGGCAGACATTGGTATAAAGAGGATGGGTGAACTTGACCAGGAGCCATTCGTTAAACTATGCAAGCAAAGATTATCATCGGAGGAAGCAGGAATGGAGG CTTTAAAGCTCTGTAGCTTATGGCAGGATAATGTGACAAATTCCCAGTGGTACCCGTTCAAAGTCATTGCCACTACTGATGGCGTCGAAAAGCTAATTGT TAACGAGCAAGACGAAAAGCTGGAAACTTTGAGGAAGGAGCTGAACGAGGAGATAGTGAAAGCAGTGGTTAAGGCTTTGGAGGAGTTGGATGAGTACAAC CCAAGTGGGAGATACATCGTAGAAGAGCTGTGGAACTTCAAAGAAGATAGGAAGGCGACATCAAAGGAGGTAATCGCTTACATCATGAAGCAAATCAAGA ATTGCAAACGCAGGCGTGTCTGA
AA sequence Show only first row Show all	>Lus10026076 pacid=23173145 polypeptide=Lus10026076 locus=Lus10026076.g ID=Lus10026076.BGIv1.0 annot-version=v1.0 MDTNREELPDNNDSDISESEIDDYVDGPYERLRSGELKVKVNGNLRCPFCAGKKKQDYDKYNHLLQHASGVAKGSATRRGKQKANHLALAKYLQIDLADE ADETVTRVLPQPPKQSPNDEDLLVWPWMGIVVNVSVESQVLDDGYWLEKFSKYNPVDVHVLPDEDCLKAIVVMKFSSDWNGYTNASEFEKSFVSQRCGKK DWNGHDKDDPGSNIYGWTAYRDDYESEGQLGEYLRKEGQLKTVSGFFQETVESRNTVVASLTEQIAKTTQNLDEIQQQYNKEAMTFSRAIEEKDRLQLAY VEETRKLQRASREDIQRILAEQERLNSEVEKWAKKIERWSKELNKREALTDRERQRLEEERKKNAVVNKSLQLASLEQQKADENLLRLAEMHQKEKEEAY NKIIQLEKQLEVKQKLEMEIQELKGKLKVLKHLEDQDDEAVKKAMKDMDDELEEKIEKLTDEETVMNVLMIKDRQSNEEVQEARKAMLQGLKNLSSGSKS KADIGIKRMGELDQEPFVKLCKQRLSSEEAGMEALKLCSLWQDNVTNSQWYPFKVIATTDGVEKLIVNEQDEKLETLRKELNEEIVKAVVKALEELDEYN PSGRYIVEELWNFKEDRKATSKEVIAYIMKQIKNCKRRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	3.5	0.9764
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	4.9	0.9672
AT2G26520			unknown protein		Lus10021765 [exp]	5.2	0.9507
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	5.3	0.9712
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	6.7	0.9593
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	7.2	0.9601
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	7.2	0.9693
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	7.7	0.9700
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	7.7	0.9610
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	8.1	0.9683

Compare expression of checked genes

Lus10026076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.