Plant FIBer expression Database

Lus10026077 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002306
[exp]
316 / 4e-111 ND /
Lus10037393
[exp]
145 / 3e-44 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Lus10041320
[exp]
142 / 4e-43 ND 37 / 0.003
Lus10016101
[exp]
64 / 1e-13 ND /
Lus10016100
[exp]
57 / 4e-11 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G088100
[exp]
156 / 8e-49 ND /
Potri.001G405600
[exp]
53 / 8e-09 ND /
Potri.011G127800
[exp]
51 / 5e-08 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0209 Bet_v_1_like PF00407 Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence
>Lus10026077 pacid=23173202 polypeptide=Lus10026077 locus=Lus10026077.g ID=Lus10026077.BGIv1.0 annot-version=v1.0
ATGAAAGGTGAGTTGTCGAGCGAGACACCGGTGGAAGCTCCGGCCAGCGCAGTGTGGGCGGCCTACAGAGGCAAGGAGCTGGGGAGGCTAGTGACTGAGT
TGATGTCAGACACCATTGGCAGAGCCGAGGTGCTTGAAGGCGACGGCGGCGTTGGCACCATCGTCAACCTCACTTTCCCACCTGGTATTCAAATTCTCTT
CCTCCAATACAAAAAATTGAAAATTAATGTTAATGCTCTGCCTCTTGGAATTTTCGCTCTGTTTTCGCTGGCCGGATGCGAGCCAATGCATCGAGTCGGA
TTTAAATTGAATTTTATTATCAGGGCAGCGACTCCTGGAGTGGGTTACATGAAGGAGATATTCACAAAGGTGGACGAGGAGAAGCGTCTCAAGGAGACTG
AAACCATAGAGGGAGGGCTCAGAGCCTTGGGGTTCGACCTTTACCGAGTCCGACTCGAAATCATCGAGACGGGAGCAGAGTCAAGCATCGTCAAATCCAC
GGTGGAGTACGAGGTGGACGACTCGAAATCTGAACTGGTCTCCTACGTTTCGACTGACCTACTCGAGCTCATTGCCAAAGTCGTTGGCAACCATGTCGTC
CAGACTTGCAAGAAGACATAG
AA sequence
>Lus10026077 pacid=23173202 polypeptide=Lus10026077 locus=Lus10026077.g ID=Lus10026077.BGIv1.0 annot-version=v1.0
MKGELSSETPVEAPASAVWAAYRGKELGRLVTELMSDTIGRAEVLEGDGGVGTIVNLTFPPGIQILFLQYKKLKINVNALPLGIFALFSLAGCEPMHRVG
FKLNFIIRAATPGVGYMKEIFTKVDEEKRLKETETIEGGLRALGFDLYRVRLEIIETGAESSIVKSTVEYEVDDSKSELVSYVSTDLLELIAKVVGNHVV
QTCKKT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026077
[exp]
0 1
AT5G42200 RING/U-box superfamily protein... Lus10034551
[exp]
15.1 0.7846
Lus10013471
[exp]
36.0 0.7437
AT3G21150 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-... Lus10034830
[exp]
40.4 0.7494
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Lus10030336
[exp]
41.2 0.7558
AT1G64090 RTNLB3 Reticulan like protein B3 (.1.... Lus10027548
[exp]
46.3 0.7176
AT4G02380 SAG21, ATLEA5 Arabidopsis thaliana late embr... Lus10029634
[exp]
54.8 0.7306
AT1G53160 SBP SPL4 squamosa promoter binding prot... Lus10039846
[exp]
62.6 0.7326
AT5G10310 unknown protein Lus10035922
[exp]
199.9 0.6621

Lus10026077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.