Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 216 / 2e-62 unknown protein AT1G15940 187 / 9e-52 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 168 / 1e-45 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 107 / 1e-24 binding (.1.2.3) AT5G10950 82 / 1e-16 Tudor/PWWP/MBT superfamily protein (.1) AT1G77600 80 / 1e-15 ARM repeat superfamily protein (.1.2.3) AT4G02070 57 / 2e-08 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G05830 48 / 1e-05 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G32620 47 / 3e-05 Enhancer of polycomb-like transcription factor protein (.1.2) AT5G13020 45 / 8e-05 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002307 [exp] 667 / 0 AT4G31880 214 / 4e-61 unknown protein Lus10018332 [exp] 198 / 1e-55 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 198 / 1e-55 AT4G31880 473 / 2e-152 unknown protein Lus10038777 [exp] 104 / 1e-23 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 102 / 5e-23 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10018180 [exp] 73 / 2e-13 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10025655 [exp] 71 / 1e-12 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10010010 [exp] 56 / 4e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10009948 [exp] 51 / 2e-07 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046500 [exp] 243 / 3e-72 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 226 / 8e-66 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G263300 [exp] 218 / 2e-62 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 208 / 3e-59 AT4G31880 389 / 3e-120 unknown protein Potri.018G109600 [exp] 142 / 2e-36 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 134 / 8e-34 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 109 / 3e-25 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 103 / 3e-23 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 82 / 2e-16 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.014G121701 [exp] 57 / 2e-08 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026078 pacid=23173311 polypeptide=Lus10026078 locus=Lus10026078.g ID=Lus10026078.BGIv1.0 annot-version=v1.0 ATGGCGGAGCTTCAGCAGCAGCTTCAGGAAGTTGGGGTTTTGCTTATAAACCCTTGTTCATCCTCCCTCGATAAGCTTGTTACTCTTCTCGACAGAGTTG AAAAGTTGCTTATGAGAGTGGAACAAAGACCTTCGGGTAGTATGAAGGATGCGGTGATATCAGTAATGAAGGGACTAATCTCTACTGCGCTTTTAAGAAA CTCAAATCCAGATGTGAGGGTTTCACTTGCTTTTTGCTACACTCAGTTCACAAGAATCACTGCACCTGATGCTCCTTACGATGATCATGGCATGAAGAAG CTTTACCAGTTAACAATAGAAGCTTTCCAGTACCTGTCAAATTCGTCAAGTCGATATTATAGCAAGGCAGTTTCAATTCTGAGTACTTTTGCATTGATCA ATTCATGCTTGGTGATGCCAGATTTGAAATTGGATCAACTCATTCTAGAACTGTTCCAACACTTCCTGGCAATTGATAGGTCCAACTGTTCACCTGATAC AATTCTGGCCATGGAAACCGTAATGAGCATGGTCATAGATGAAACTGAAGATGTATCTGTAGCTATGCTCACTCCTTTACTGGCTAGCACGGTTTCTCCC ATTGCATGGCAGCTTGGGGAAAAAGTAATGACTAATTGTGCTGCCAAACTCAAAACTAGTCCTCTCAATGAAGCAGTGCACTCTATAGGCATAGCATTGG ATGATTATGCTTCTATTGTTGCTGATATCTGCCAGGATAGTGAGCATCCATCTCTTCCGGATTCTCCAAACCGTTCGCAGAAGCCTACTGTTCCAAGGAA AAGAGGGAGGAAACGTAAGTCGTTGAGGAAAATAGAGGAAGTTTATGATCATCCAACGGTCCAAACAGAAACAGGCCGTAGAAGAGGCACCCCGAGAAAA AAAGGAACCAAGGATTCAGATATCTCTGCATCACCAGTTAAAGATAAAGTCTTGAGTTCTCAACTTAAGAGGCTTGATATAATGTTCTGGATACAGGCTA GTAATGCCGATAACCTTGCTAAGCTACTCGTTGGGAAGAGAGTCAGAGTTTGGTGGCCTGAAGACAAGGAGTTTTATGAAGGAGCAATTCATAGCTACGA TCCAACTTCCAAAAAGCACAAGATTTTGTATGCTGATGGAGATGTGGAGATACTGAATCTAGAGAAGGAAAGATGGGAGCGTTCTAACGTCGAAGAACTA CAAGAGGAACTAGGATCAATGAAGTATTCATGTACTATCGAGTCGAAAGAGAATGTTCCGAGCAGTGTAGGTGGTAGCTGCAGGGAGGAGACTGCAGCAT GA
AA sequence Show only first row Show all	>Lus10026078 pacid=23173311 polypeptide=Lus10026078 locus=Lus10026078.g ID=Lus10026078.BGIv1.0 annot-version=v1.0 MAELQQQLQEVGVLLINPCSSSLDKLVTLLDRVEKLLMRVEQRPSGSMKDAVISVMKGLISTALLRNSNPDVRVSLAFCYTQFTRITAPDAPYDDHGMKK LYQLTIEAFQYLSNSSSRYYSKAVSILSTFALINSCLVMPDLKLDQLILELFQHFLAIDRSNCSPDTILAMETVMSMVIDETEDVSVAMLTPLLASTVSP IAWQLGEKVMTNCAAKLKTSPLNEAVHSIGIALDDYASIVADICQDSEHPSLPDSPNRSQKPTVPRKRGRKRKSLRKIEEVYDHPTVQTETGRRRGTPRK KGTKDSDISASPVKDKVLSSQLKRLDIMFWIQASNADNLAKLLVGKRVRVWWPEDKEFYEGAIHSYDPTSKKHKILYADGDVEILNLEKERWERSNVEEL QEELGSMKYSCTIESKENVPSSVGGSCREETAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31880			unknown protein		Lus10026078 [exp]	0	1
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	6.9	0.9676
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	10.0	0.9598
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10036928 [exp]	12.2	0.8426
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	12.2	0.9597
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	14.1	0.9596
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	15.8	0.9596
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10008858 [exp]	16.5	0.7918
					Lus10014738 [exp]	17.1	0.7764
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	17.3	0.9596
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	18.7	0.9596

Compare expression of checked genes

Lus10026078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.