Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 1001 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 984 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 979 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78970 943 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 928 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 850 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G48010 849 / 0 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT2G07050 844 / 0 CAS1 cycloartenol synthase 1 (.1) AT4G15340 834 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT5G36150 832 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 888 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 865 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 848 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 842 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10033355 [exp] 839 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10025684 [exp] 781 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10016439 [exp] 711 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 684 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10008544 [exp] 649 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049100 [exp] 1111 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.014G002400 [exp] 1020 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 1014 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002100 [exp] 974 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 958 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 842 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 833 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.004G132500 [exp] 827 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 824 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002500 [exp] 823 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10026079 pacid=23173146 polypeptide=Lus10026079 locus=Lus10026079.g ID=Lus10026079.BGIv1.0 annot-version=v1.0 ATGTGGAAACTAAAGATTGCACAAGGGGGCAAAGACCCGTACATATTCAGCAAGAACAACTTCTGCGGGAGGCAGATATGGGAATTCGACCCCGAAGCCG GCACCGACGAAGAGAAGGCCGAAGTAGAAGAGGCTCGACGACATTTCCGGGACAACCGGTTCGGCCGTGCCAAAGCCGACTCCGACCTCCTCTACCAATT CCAGTTTCTGAGGGAGAAAAAGTTCAAACAAACGATTCCGAGAGTGAAGATTGAAGATGGAGAGGAAATAACGTACGAAGTTGCGACGGCTGCTTTGAGG AGAAGCGTCCGGTTGTTTACCGCCCTGCAGGCTACCGACGGCCACTGGTGTGCTGAAAATTCCGGCGTTAATTTCTACTTCCCTCCTTTGAATGAAGATG GAGGATGGGGACTACACATAGAAGGACATAGCATGATGTTTTGTACTGTACTCAACTACGTTCAGATGCGTTTGCTCGGAGAAGACCCCGACGGCGGCGA AGAGAAAGCTTGCCAACGAGCTCGAAAATGGATTCTCGATCATGGCGGCGCCACCGAAATCAGCTCTTGGGGCAAAACTTGGCTCGCGATTCTTGGGGTT TATGAGTGGGATGGATGCAACCCTATGCCTCCGGAGTTCTGGGTTTTCCCAACCATGTTTCCCATGCATCCAGCAAAAATGTTTTGCTACTGCAGACTTA CGTTCATGCCGATGTCCTACTTGTACGGAAAGAGGTTTGTGGGCCCCATCACGCCACTTCTCCTACAGATACGACAAGAAATCTACAACCAACCCTATTC CCATATTAATTGGAACAGCGTTCGTCACTCATGTGCGCCCGAAGATAATTACTATCCGCACGGCGCCACGCAGAAGCTACTGTGGGACGCTCTTAACAAT GTATGTGAGCCTTTGGTTAGACGTTGGCCGTTCAGTAAAATCAGGGCCAAGGCTCTTAAGTTGACCATGGATCACATTCACTACGAGGATGTTAGCAGTT GCTACATTACCATCGGCTGCGTTGAAAAGCCGTTGAACATGCTGGCGTGTTGGGTTGATGACCCAGACGGGGAGGAGTTTAAAATGCATCTGGCTAGGAT TCCGGATTACCTTTGGATGGGAGAAGATGGAATGAAAATGCAGAGCTTCGGCAGTCAAGCGTGGGACACAGGGCTAGCCCTGCAAGCATTGATTGCCAGT GACTTGATCGAAGAGACTTCAACTGCATTTGAGAAAGGTGTCAGTTTCCTCAAGAACTCTCAAGTGATTGACAATCCACCTGGTGACTTCAACGCCATGT TCCGTCACATCTCCAAAGGCTCCTGGACCTTCTCTGACCGAGACCATGGCTGGCAAGTTTCAGATTGCACTGCCGAAGCTTTGAAGTGTTGCCTGCTATT GACAATGCCTCCTCATGATATCGTTGGAGAGAAAATGCCGTTTGGAAACCTCTGCGATGCTGTCAATATTATACTCTCTCTTCAGAATAAGAACAATGGA GGGTGTTCGGCATGGGAGCCTTCAGGAGAAAAATCATGGTTAGAGTGGTTTAATCCGGTGGAATTTCTTACAGATCTTGTGATTGAATACGAATATGTGG AATGCACCTCGTCATCGATCCAAGCATTACTGTTGTTTAAGAAATTACATCCCACCCATAGAGCCAAAGAAATCGACGACTTCGTAACAAGGGCCGTCAA ATTTCTCCAAGATATTCAAAAGCCCGATGGTTCATGGTACGGGAATTGGGGAATATGCTTCATGTATGGAACATGGTTTGCTATGGGAGGGTTAGTTGCT GCAGGGAAAACATATGAAAACTGCGTTGCAATTCGAAACGCAGTCGCTTTCCTTCTTAAAACGCAAAGACAAGATGGAGGATGGGGAGAAAGCTACCTTT CATGCCCTACAAAGGAGTACGTCCCTCTCGAAGGTCTGTCGTCCAACTTGATTCACACTTCATTTGCCATGATGGGTTTAATCCTCGGTGGACAGGCAAA GAGAGACCCTGAACCTCTTCATATAGCTGCGAAGTTACTGATAAATTCACAAAATGAGCTGGGTGATTTTCCTCAGCAGGAACTTATGGGAGTATTTATG AGGAATTGTATGCTACACTATGCTGCTTACAGAAACATTTTCCCTATCTGGGCTCTTGGAGAGTATCGTCGTGAAGTTTGTTTTCATTAA
AA sequence Show only first row Show all	>Lus10026079 pacid=23173146 polypeptide=Lus10026079 locus=Lus10026079.g ID=Lus10026079.BGIv1.0 annot-version=v1.0 MWKLKIAQGGKDPYIFSKNNFCGRQIWEFDPEAGTDEEKAEVEEARRHFRDNRFGRAKADSDLLYQFQFLREKKFKQTIPRVKIEDGEEITYEVATAALR RSVRLFTALQATDGHWCAENSGVNFYFPPLNEDGGWGLHIEGHSMMFCTVLNYVQMRLLGEDPDGGEEKACQRARKWILDHGGATEISSWGKTWLAILGV YEWDGCNPMPPEFWVFPTMFPMHPAKMFCYCRLTFMPMSYLYGKRFVGPITPLLLQIRQEIYNQPYSHINWNSVRHSCAPEDNYYPHGATQKLLWDALNN VCEPLVRRWPFSKIRAKALKLTMDHIHYEDVSSCYITIGCVEKPLNMLACWVDDPDGEEFKMHLARIPDYLWMGEDGMKMQSFGSQAWDTGLALQALIAS DLIEETSTAFEKGVSFLKNSQVIDNPPGDFNAMFRHISKGSWTFSDRDHGWQVSDCTAEALKCCLLLTMPPHDIVGEKMPFGNLCDAVNIILSLQNKNNG GCSAWEPSGEKSWLEWFNPVEFLTDLVIEYEYVECTSSSIQALLLFKKLHPTHRAKEIDDFVTRAVKFLQDIQKPDGSWYGNWGICFMYGTWFAMGGLVA AGKTYENCVAIRNAVAFLLKTQRQDGGWGESYLSCPTKEYVPLEGLSSNLIHTSFAMMGLILGGQAKRDPEPLHIAAKLLINSQNELGDFPQQELMGVFM RNCMLHYAAYRNIFPIWALGEYRREVCFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	0	1
AT3G52610			unknown protein		Lus10022698 [exp]	1.4	0.9983
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	2.0	0.9982
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	2.4	0.9975
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	2.8	0.9965
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	3.9	0.9931
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	4.6	0.9871
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	11.1	0.9824
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10020268 [exp]	13.3	0.9527
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	14.7	0.9871
					Lus10007546 [exp]	17.9	0.9853

Compare expression of checked genes

Lus10026079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.