Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16850 433 / 1e-135 ATTERT telomerase reverse transcriptase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002308 [exp] 178 / 7e-50 AT5G16850 159 / 6e-44 telomerase reverse transcriptase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022600 [exp] 626 / 0 AT5G16850 747 / 0.0 telomerase reverse transcriptase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12009 [flax] [poplar] Telomerase_RBD Telomerase ribonucleoprotein complex - RNA binding domain CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
Representative CDS sequence Show only first row Show all	>Lus10026080 pacid=23173143 polypeptide=Lus10026080 locus=Lus10026080.g ID=Lus10026080.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGGAAAAGGAAGCCAAGAGTCCCTCAAGTCCTATGGAAGCTGTTCGGCAAAAGAGTGCGCAACCTTGCCAACACTCTCGTCTCCATGATTC CTCCTCATCCTTCTTCTCTCCCGCCGCCGTCTTGCACTTGCGTTGGTTCTCCTCCTCCTTCCGGCTGCCTCCACTGTACAACCGGCGAGAGGGCTAAGCT GCTTCTTCTCAGGCCAGATGACCCACCTGATTACCGGAAACTGCTCACTTTATGTTACGTCGTCGTCAACGACAATGCGCCTCCCATACGCAGCTTCCAA GACATTATGAAGAGGGCTAGAATTAGCCAGGATAACTCCGTCTCCGTGCAGCAGCAGACTTCTTCTAGCTGTTTTGGCAATATAAGGAGCAGTAATTTGA TGCATCATCCTAGCCATACTGCTCAGAAATATGATCATATGGTTGCTCCTGACGCAGAGGGAAGTGCAAACGAAAGTATTTCAAGTGAAGGCTCCAACAA TAACATGTTGGATAGCAGAAAGACTGTCCAGAACCTTAACAAACCTTCAGATGTATTGAGATCCTCGAAACCTAACTATGAAGGTTCAAAGTCCCTTCTT CATGGTATTTTTGACTTATCTGATGAAGCTGGAAGCAAACAGTCACTGACATGCTCCAACAATAATGGTTCTTGCCAGAATCGATCCACCTGCGTACATC ATTCACTTGCTAAACTGCTAAGGATTTTAATCTTCCGAACTCAGCGGTGCAATCATTTAAAGTTATTAGATAAACACTGTACCGTTCCCTCCTCATTTGA GAATAAGGAGTTGACTGGGAAAGAATATGAGAGTTCCTTCAGCAACCTAAAGCCCTGTAGTAAAGCCAAAGCTGCTACTGATGCTCAGATCAACGCAATA AACTCTTATTGCTCAAAACATCAGGTGGCGTCATTTATATGGGCTGTATGTAGAAATGTGGTTCCTTCTGACTTGCTAGGAAGCAGTAGGATTTTAATGA GAAACATTGCCAAGTTTATCAAGCTGAGAAGATATGAAAAGTTCTATTTGAAACAAGGCATGCATAAATTGAAGACCTCAAGCTTCCCCTTCTTGTCCAA CATTTTGAACAATGGTGCAAATCAGTTGAAACACGTGCTCCTAGAGAAATGGATATCTTGGCTGTTCTCTAATCTTATCGTTCCCTTGCTCCGAGCTAAC TTCTATATCACCGAAACTGAGCACGGGAAACAAGATGTTTTCTATTATCGGAATTCAGCGTGGAAAAGGTTGCGGAATCAAGCCATTGCTTGCTTAAAAG ACCAGAACTATCGAAGCCTGCACTATGCTCAAGTTCTGGAAGTTGTAAATAACAGATCTTTTGGTTTCTCAAAGCTCAGGTTTCTTCCGAAACAAAAATC TGTGAGGCTGGTTGCAAATCTCAAAGCAGCATCAAAGCTTCCCGGTGAAGGCAGGTTTCTGAAGTCTGTGAATGGCGTACTTAGTGATGCACATGCTGTT CTTAGAGGTATATTGTTGAAACAGCCAGAGAAGTTCGGATCATCAGTGTTTGACTACAATGACATTTACAAGAAGTTGTGTCCATTCATAATGAGTCTGA GAAATGCGTCAATCTCGCTGCGTGATGTCTTCATTGTTGTTTCTGATGTATCAAAAGCTTTCGATTCCGTGAATCAGGATAAACTGCTTAGTATTATGAA TCAAGTGGTAAGCGACAACAAGTATTTTCTGAAACGAGTCAAACAAGTTGCCTGCAGTGAGAAAGCTTTGTGGGTGCAACAGAAGGCCACCCTCTATGAT CCCAACATTGCCACTGATTGTATAAGAGGGGCTGCTCCCGTTTTTGGTGCTTTAAGCACCGTCCTTGTCAATCAGGGCCGAGAAAGTTACTTGACGAGAC GAGATCTCCTTATTATTCTGGAGAAGCATGTGAAGCATAATATTCTGCGGATGGGTGAACTGTTTTATTTGCAAGGTATGGGAATACCTCAGGGAAGTAT TGTATCTTCTCTGCTCTGCTCCCTATATTACGGGCACCTTGACAGACACTTTCTTTTCCCATACCTCAATGAAACAAGCAAATCAAACATCAAAGATGTA TCGATAGGTCTTCAGTTCGACAGTTCTGGAAATGAAGCAGATTGTCTAGAAATCCCATATTCAAGTTACGTACTTATGAGATTTATTGACGATTTCCTCC TCATAACAACTTCAAAGGACCAGGCCACGAGCTTTGTCTCAAAGTTGAAAAGAGGGTTTAGGGACTACAACTGCTACATGAATCAGGACAAATATTGTCT TAATTTTGATATTGGACGTGAATCAAAGCTCCCGTCAAACAGGAGCTACTGCAGCAATGATGGTACTTCATTTCTTCCATGGAGTGGGTTGCTTTTGAAC TCTTGCACTTTAGAAATTCAAGCAGACTATACAAGGTACATGGATAAATTGATAAAGAGAAGGATGCGCTCTGTAACTAGTGGTTCTCGTCCAGTTCTCC AGTTGCAAAAGGAAGAAGTTTACTGGCTTGCGATGAAAGCCTACATTGCTGTGCTGAAGAAGAAACAGTCTCGGCACAGAGATTTGCTCTCCATGTTGAG ATCCAAGCTGTCAGCTCACCCTATTAGCGACGGTGAGAATGTTAAACCTGAACTGAAGTATGCTGTGGACAGGTCGAATTCGTCTTTGCTATGGGGAATC AAGTATTGA
AA sequence Show only first row Show all	>Lus10026080 pacid=23173143 polypeptide=Lus10026080 locus=Lus10026080.g ID=Lus10026080.BGIv1.0 annot-version=v1.0 MAKRKRKPRVPQVLWKLFGKRVRNLANTLVSMIPPHPSSLPPPSCTCVGSPPPSGCLHCTTGERAKLLLLRPDDPPDYRKLLTLCYVVVNDNAPPIRSFQ DIMKRARISQDNSVSVQQQTSSSCFGNIRSSNLMHHPSHTAQKYDHMVAPDAEGSANESISSEGSNNNMLDSRKTVQNLNKPSDVLRSSKPNYEGSKSLL HGIFDLSDEAGSKQSLTCSNNNGSCQNRSTCVHHSLAKLLRILIFRTQRCNHLKLLDKHCTVPSSFENKELTGKEYESSFSNLKPCSKAKAATDAQINAI NSYCSKHQVASFIWAVCRNVVPSDLLGSSRILMRNIAKFIKLRRYEKFYLKQGMHKLKTSSFPFLSNILNNGANQLKHVLLEKWISWLFSNLIVPLLRAN FYITETEHGKQDVFYYRNSAWKRLRNQAIACLKDQNYRSLHYAQVLEVVNNRSFGFSKLRFLPKQKSVRLVANLKAASKLPGEGRFLKSVNGVLSDAHAV LRGILLKQPEKFGSSVFDYNDIYKKLCPFIMSLRNASISLRDVFIVVSDVSKAFDSVNQDKLLSIMNQVVSDNKYFLKRVKQVACSEKALWVQQKATLYD PNIATDCIRGAAPVFGALSTVLVNQGRESYLTRRDLLIILEKHVKHNILRMGELFYLQGMGIPQGSIVSSLLCSLYYGHLDRHFLFPYLNETSKSNIKDV SIGLQFDSSGNEADCLEIPYSSYVLMRFIDDFLLITTSKDQATSFVSKLKRGFRDYNCYMNQDKYCLNFDIGRESKLPSNRSYCSNDGTSFLPWSGLLLN SCTLEIQADYTRYMDKLIKRRMRSVTSGSRPVLQLQKEEVYWLAMKAYIAVLKKKQSRHRDLLSMLRSKLSAHPISDGENVKPELKYAVDRSNSSLLWGI KY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	7.7	0.9166
AT1G67040			unknown protein		Lus10033565 [exp]	8.1	0.9231
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	10.0	0.9265
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	13.8	0.9183
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	14.0	0.9157
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10009771 [exp]	14.7	0.9197
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	15.3	0.9141
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	15.4	0.8937
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	15.5	0.9152
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	16.1	0.9207

Compare expression of checked genes

Lus10026080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.