Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57970 272 / 1e-89 DNA glycosylase superfamily protein (.1.2) AT1G80850 271 / 1e-89 DNA glycosylase superfamily protein (.1) AT1G15970 260 / 7e-85 DNA glycosylase superfamily protein (.1) AT1G75090 231 / 8e-74 DNA glycosylase superfamily protein (.1) AT1G13635 199 / 1e-61 DNA glycosylase superfamily protein (.1.2) AT3G12710 197 / 8e-61 DNA glycosylase superfamily protein (.1) AT5G44680 195 / 1e-59 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002310 [exp] 520 / 0 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10036248 [exp] 201 / 8e-62 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10019198 [exp] 172 / 1e-52 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10019199 [exp] 134 / 3e-37 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10036835 [exp] 132 / 4e-36 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10038388 [exp] 124 / 4e-33 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2) Lus10028119 [exp] 70 / 8e-13 AT1G30130 368 / 2e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182300 [exp] 308 / 1e-103 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 286 / 7e-95 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 283 / 2e-93 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 243 / 1e-78 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.002G133800 [exp] 240 / 3e-77 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 208 / 4e-64 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 205 / 5e-63 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.003G156500 [exp] 203 / 5e-62 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.001G074700 [exp] 199 / 1e-60 AT5G44680 395 / 7e-137 DNA glycosylase superfamily protein (.1) Potri.010G137300 [exp] 196 / 2e-60 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10026083 pacid=23173171 polypeptide=Lus10026083 locus=Lus10026083.g ID=Lus10026083.BGIv1.0 annot-version=v1.0 ATGGATCCGGAGAACAAAGGAAGGAATCGGGTAATGTCGGGTCCGGCGAGATTCCGGTTGTTGAAAATATCTGAGCCGGAGAAGAAGGGGCTGCAGCAAA AGCCAGCAGCTAGGAAGCAACAAGTGGCGGAGGTTCTGCGGCAGAAGTCCATGAATGCTTCGTGCTCATCGGATGCGTCGTCCGATTCCACGAGCAGCAG TAGCCTGGCATCTTCTTCCTTGTCGTCGGCGACGACGGGTGGAATGTTGGGGCGGAGCAACGGAACCGCCGCGGCGGGGAGGAGGCAGCAATGTAGGTTG AGAATTGACAAAGATGAGGAAGGGAGATGTGGAAATGGGGCGGCGGAGGACGAGAGTGGCGGCGATGTTCCGAGTAGGAAAAGGTGCCCTTGGGTTACTC CGACAACTGAACCATCGTACGCAGCATTTCATGATGAAGAATGGGGAGTGCCAGTCCATGATGACAGGAAACTTTTTGAACTGCTAAGTTTGTCTGGAGC CCTGGCAGAACTAGCATGGCCTGCCATTCTTGACAAACGACAGATGTTTAGAGAAATCTTTCTAGATTTCGACCCAATGGCTGTGTCGAAGCTGAACGAG AAGAAGTTTGTCATGGCTGGAAGCCCAGCTCGCTCTCTTCTCTCGGAACAGAAGCTACGCTCAATCCTCGAAAATGCACGCCAAATTTGCAAGGTTAGGG CGGAGTTTGGATCATTTGACAAGTACATCTGGAATTTTATGAACCAAAAGGCTACCACAAACTCATTCAGGTACTCCCGCCAAGTTCCGGTCAAGACATC AAAAGCAGAAGTGATAAGTAAAGATCTCGTGAGGAGAGGGTTCCGATGTATTGGACCGACGGTTATATACTCGTTCATGCAAGTAGCCGGTCTAACGAAC GACCATCTCATCAGCTGCTACAGACACCATGAATGCAGCATAGCAGAGGCCAAGGAAACTGCAGAAATTCATCTCAAGTCAAAGAAAGAAGCCGAACAAC CATTTGCAGAATAG
AA sequence Show only first row Show all	>Lus10026083 pacid=23173171 polypeptide=Lus10026083 locus=Lus10026083.g ID=Lus10026083.BGIv1.0 annot-version=v1.0 MDPENKGRNRVMSGPARFRLLKISEPEKKGLQQKPAARKQQVAEVLRQKSMNASCSSDASSDSTSSSSLASSSLSSATTGGMLGRSNGTAAAGRRQQCRL RIDKDEEGRCGNGAAEDESGGDVPSRKRCPWVTPTTEPSYAAFHDEEWGVPVHDDRKLFELLSLSGALAELAWPAILDKRQMFREIFLDFDPMAVSKLNE KKFVMAGSPARSLLSEQKLRSILENARQICKVRAEFGSFDKYIWNFMNQKATTNSFRYSRQVPVKTSKAEVISKDLVRRGFRCIGPTVIYSFMQVAGLTN DHLISCYRHHECSIAEAKETAEIHLKSKKEAEQPFAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	0	1
AT1G80850			DNA glycosylase superfamily pr...		Lus10002310 [exp]	1.0	0.9047
AT4G32915			unknown protein		Lus10006882 [exp]	5.2	0.7991
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	6.9	0.8317
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	6.9	0.8204
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	9.2	0.7965
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	14.8	0.7827
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	21.5	0.7977
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	24.7	0.7926
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	26.1	0.7336
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	26.7	0.8023

Compare expression of checked genes

Lus10026083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.