Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 336 / 9e-110 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46960 325 / 1e-105 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14640 324 / 4e-105 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14610 324 / 5e-105 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14690 321 / 6e-104 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G46950 322 / 2e-103 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT4G27710 320 / 2e-103 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14680 318 / 9e-103 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14630 314 / 3e-101 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14660 313 / 5e-101 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026085 [exp] 855 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 805 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10028119 [exp] 736 / 0 AT1G30130 368 / 2e-121 unknown protein Lus10002311 [exp] 729 / 0 AT3G14630 317 / 8e-104 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019184 [exp] 547 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10002108 [exp] 470 / 4e-162 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 469 / 1e-161 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 466 / 2e-160 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 466 / 6e-159 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 521 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 510 / 5e-178 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 508 / 8e-177 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 502 / 2e-174 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 487 / 9e-169 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 476 / 1e-164 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 351 / 1e-115 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.018G070900 [exp] 346 / 1e-113 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 346 / 1e-113 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 343 / 1e-112 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026084 pacid=23173101 polypeptide=Lus10026084 locus=Lus10026084.g ID=Lus10026084.BGIv1.0 annot-version=v1.0 ATGATGATGCCTGACCTCAAAGCCTTACCGACGATGCTGTTTCTTCCACACGGAGCTCTCTTTCTCGTATTGCCTCTGGCTTTGATTACGATACTGCTTT ACAATCTGATGGTAAAGCCACTCCTACTTCAGCGTCGTCTGAATTCCCTCGGAATCAGAGGCCCATCCTACAGATTCTTCTATGGAAATACTCTGGAAAT CCAGAAGCTAAAAAAGGCCGCCATGGCAAAACCTATGCCAGGTCTTTCTCATCAAATTCATTCCAGGTTGCAGCCTCATTTGTCCGCCTGGTCTAAGACA TACGGCCCAAATTTCATGTTCTGGATCGGTAGTCGCCCTTTCTTGGTTGTGTCGGAGCTAGAGATGGTGAAGCAAGTGGCGAACGATCGAGACAAAGCTT ATGGGAAAATACCACCAAAAGGTATAATGAAGCAGATACTCGGAGATGGACTGATAACGTCGGAGGGTGAAAAGTGGGCCAAGATGAGAAAGCTCGCTAA TTTTGCCTTCTTCGGAGAGAGCTTAAAGAATATGGTTCCAGCAATGATTGCTAGCACAGATATGATGCTAGAGAGGTGGAAGAGTCACGTAGAGAAAGAG GTTGAGGTGTTTGAAGAATTCAGGTTCTTATCAGCTGAAGTCATTTCCAGGACTGCATTTGGGAGTAGCTACTTGGAAGGAAAGCAGCTCTTTTACAAGT TGAGTAAGCTTACTGAGCTCGGTGTTGCCCGTTTCTTCAAAGTTAGAATTCCTGGAATCAGCAAGATTTACAAAACCAGTGCTGATATTGAGGCAAACAA GCTTGAGCAAGGAATAAGAGCGTCTATATTGGAAATGCTTCGAAAAAGAGAAGATATGATCGCAGCGGGAGAAGCAGATGGCTTTGGGAACGATTTCCTC GGATTACTACTGAGAGCTAATCACGAAAGAGACGAATCGAAGCGAATTACGGTGGATGATGTTGTGGATGAGTGCAAGACCTTCTATCTTGCTGGACAAG AAACAACAAACACTCTGCTTGCATGGGTTATCTTACTTCTATCTATCCACACAGATTGGCAGGAGAAAGCCAGAGCAGAAGTTTTGAGCCAATTCGGTAG CCGAGCTCCGGACGCAGATGGGATTGCTAGGCTCAAAATTTTGAACATGATTATCAATGAGACACTGCGACTATATCCTCCTGCGAGCGGGATTACTCGA GAAGTTGTGAAAGATGTTCAACTAGGGAAGCTGACTATCCCTAAGAGAACACACATCACCATCGATACAATATCGCTTCATCAAGACCCTAAAATTTGGG GAGAAGATGCGCATGAGTTCAACCCGGAAAGGTTTTCTGAAGGAGTTGCCAAAGCCACGAAGAACAATCCATCTGCATTTCTTCCGTTTGGGATAGGGGT GAGAGTTTGTGTGGGGTCCAGCTTTGCGGCAAATGAAGCGAAGATTGCACTTTCGATGATCCTTCAGTGTTATACGTTCACTCTTTCTCCGACTTACATT CACTCTCCTACTCAAATGATAACAACTCGCCCGCAGCATGGAGTTCAGATCATCCTCCATGCCTTACAGTAG
AA sequence Show only first row Show all	>Lus10026084 pacid=23173101 polypeptide=Lus10026084 locus=Lus10026084.g ID=Lus10026084.BGIv1.0 annot-version=v1.0 MMMPDLKALPTMLFLPHGALFLVLPLALITILLYNLMVKPLLLQRRLNSLGIRGPSYRFFYGNTLEIQKLKKAAMAKPMPGLSHQIHSRLQPHLSAWSKT YGPNFMFWIGSRPFLVVSELEMVKQVANDRDKAYGKIPPKGIMKQILGDGLITSEGEKWAKMRKLANFAFFGESLKNMVPAMIASTDMMLERWKSHVEKE VEVFEEFRFLSAEVISRTAFGSSYLEGKQLFYKLSKLTELGVARFFKVRIPGISKIYKTSADIEANKLEQGIRASILEMLRKREDMIAAGEADGFGNDFL GLLLRANHERDESKRITVDDVVDECKTFYLAGQETTNTLLAWVILLLSIHTDWQEKARAEVLSQFGSRAPDADGIARLKILNMIINETLRLYPPASGITR EVVKDVQLGKLTIPKRTHITIDTISLHQDPKIWGEDAHEFNPERFSEGVAKATKNNPSAFLPFGIGVRVCVGSSFAANEAKIALSMILQCYTFTLSPTYI HSPTQMITTRPQHGVQIILHALQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	0	1
AT3G25590			unknown protein		Lus10034409 [exp]	4.5	0.9272
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	7.1	0.9179
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	9.2	0.9072
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	10.2	0.8809
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	11.2	0.9023
AT4G22560			unknown protein		Lus10028927 [exp]	11.7	0.9046
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	19.3	0.9029
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	19.4	0.8933
					Lus10020006 [exp]	20.5	0.8915
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	21.9	0.8799

Compare expression of checked genes

Lus10026084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.