Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 365 / 6e-121 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46960 353 / 2e-116 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14610 350 / 4e-115 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 346 / 2e-113 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14690 345 / 2e-113 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 341 / 1e-111 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14630 340 / 2e-111 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT4G27710 340 / 2e-111 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14660 340 / 4e-111 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G46950 339 / 3e-110 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026084 [exp] 880 / 0 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017775 [exp] 830 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10002311 [exp] 754 / 0 AT3G14630 317 / 8e-104 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10028119 [exp] 751 / 0 AT1G30130 368 / 2e-121 unknown protein Lus10019184 [exp] 590 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036818 [exp] 508 / 6e-177 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 502 / 2e-174 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10002108 [exp] 499 / 1e-173 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 495 / 2e-170 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 557 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 538 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 534 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 523 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 522 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 507 / 9e-177 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 377 / 9e-126 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 375 / 1e-125 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 375 / 7e-125 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.006G154500 [exp] 374 / 1e-124 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026085 pacid=23173201 polypeptide=Lus10026085 locus=Lus10026085.g ID=Lus10026085.BGIv1.0 annot-version=v1.0 ATGCCAGATCTCAAAGCCTTGCCGATGATGCTGCTTCGTCCACAAACAGCCCTCTTTCTCGTATTGCCTCTGGCTTTGATTTCGATATTGCTTTACAATC TGATGGTAAAGCCAATCCTGCTTCAGCGCCGTCTGAATTCCATCGGAATCAGAGGCCCGCCGTATAGATTCTTCTACGGAAACACTCTGGAGATTCAGAA GATGAGAAAATCCGCCGTGGCGAAACCCATGCCGGGTCTTTCTCATGATGTTTACTCCAGGTTGCAGCCTCACTTGTCCGCCTGGTCTAAGACATACGGC CCGAATTTCGTGTTTTGGATCGGCAATCGCCCTTTCTTGGCTGTGTCGGAGCCGGAAATGGTGAAGCAAGTCTCGAACGATCGAGACAAAGCTTACGGGA AAATACCACCCAGAGGTATAATGAAGCAGATACTCGGAGATGGACTGGTCACGTCGGAGGGCGAAAAGTGGACCAAGATGAGAAAGCTCGCTAATTTCGC CTTCTTCGGCGAGAGCTTAAAGAATATGGTTCCAGCAATGATTGCTAGCACAGAAATGATGCTAGAGAGGTGGAAGGTTCATGTAGGAAAAGAGGTTGAG GTGTTTGAAGAATTCAGATTCTTATCAGCTGAAGTCATTTCCAGGACTGCGTTTGGGAGTAGCTACTTGGAAGGAAAGCAACTCTTTCACAAGTTGAGTA AGCTTACTGAGCTCGCCGCCGCCAGTTTCTTCAAAATTCGGATCCCTGGACTCAGCAAGATTTACAAAACCAGTGCTGATATTGAAGCCAAGAAGCTTGA GGAAGGAATAAGAGCGTCTGTATTGGGAATGCTTCGAAAAAGAGAGGAGATGATTGCAGCGGGGGAGGCAGACGGCTTTGGGGACGATTTCCTTGGATTA CTTTTGAGAGCTAATCACGAAAGTGACGAATCGAAGCGAATTACGGTGGATGATGTGGTGGATGAGTGCAAGACGTTCTATCTTGCCGGACAAGAAACAA CCAACACTCTCTTGGCATGGGTTATCTTACTTCTATCTATCCACACTGATTGGCAGGAGAAAGCAAGAGCAGAAGTTCTGAGCCAATTCGGCAGCCGAGC TCCGGACTCCGACGGGCTTGCAAGGCTCAAGATTTTGAACATGATTATCAACGAGACACTGCGATTGTATCCTCCAGCAAGCGGGATTACTCGAGAAGTT ACGAAAGATGTCCAACTAGGGAAGCTGGCTCTCCCTAAGAAAACACTCATCATCATCGATGCAATGACATTTCATCTAGACCCTAAAATTTGGGGAGAAG ATGCACATGAGTTCAATCCGGAAAGGTTTTCAGAAGGAGTTACCAAAGCCACAAAGAACAATCCATCCGCGTTTCTTCCGTTTGGGATAGGGGTGAGAGT TTGTGTGGGGTCCAGCTTTTCGGCCAATGAAGCGAAGATTGCACTTTCGATGATCCTTCAGCGTTATGCGTTCACTCTCTCCCCGACGTACATTCACTCT CCCATTCAAATGATAACAACCCGCCCGCAGCATGGAGTTCAGGTCATCCTCCATGCCCTCCAGTAA
AA sequence Show only first row Show all	>Lus10026085 pacid=23173201 polypeptide=Lus10026085 locus=Lus10026085.g ID=Lus10026085.BGIv1.0 annot-version=v1.0 MPDLKALPMMLLRPQTALFLVLPLALISILLYNLMVKPILLQRRLNSIGIRGPPYRFFYGNTLEIQKMRKSAVAKPMPGLSHDVYSRLQPHLSAWSKTYG PNFVFWIGNRPFLAVSEPEMVKQVSNDRDKAYGKIPPRGIMKQILGDGLVTSEGEKWTKMRKLANFAFFGESLKNMVPAMIASTEMMLERWKVHVGKEVE VFEEFRFLSAEVISRTAFGSSYLEGKQLFHKLSKLTELAAASFFKIRIPGLSKIYKTSADIEAKKLEEGIRASVLGMLRKREEMIAAGEADGFGDDFLGL LLRANHESDESKRITVDDVVDECKTFYLAGQETTNTLLAWVILLLSIHTDWQEKARAEVLSQFGSRAPDSDGLARLKILNMIINETLRLYPPASGITREV TKDVQLGKLALPKKTLIIIDAMTFHLDPKIWGEDAHEFNPERFSEGVTKATKNNPSAFLPFGIGVRVCVGSSFSANEAKIALSMILQRYAFTLSPTYIHS PIQMITTRPQHGVQVILHALQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	2.4	0.9096
AT1G70160			unknown protein		Lus10010721 [exp]	3.5	0.9204
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	7.1	0.9187
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	8.1	0.9057
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	10.7	0.9058
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	12.5	0.8955
AT1G70160			unknown protein		Lus10029209 [exp]	12.7	0.9037
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	13.0	0.8639
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	14.2	0.8840
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	15.4	0.8954

Compare expression of checked genes

Lus10026085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.