Plant FIBer expression Database

Lus10026086 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15980 552 / 0 PnsB1, NDH48, NDF1 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002312
[exp]
706 / 0 AT1G15980 638 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G044300
[exp]
544 / 0 AT1G15980 639 / 0.0 Photosynthetic NDH subcomplex B 1, NAD\(P\)H DEHYDROGENASE SUBUNIT 48, NDH-dependent cyclic electron flow 1 (.1)
PFAM info
Representative CDS sequence
>Lus10026086 pacid=23173312 polypeptide=Lus10026086 locus=Lus10026086.g ID=Lus10026086.BGIv1.0 annot-version=v1.0
ATGGCCTCAACATGCCTCCTTCCCAAACCCATCACTCAACTTTTCCTGAAAACCCCACCATCACATTCCTCCCCTTCGTCACAATTCACCACAAAGCCGA
ATCAAAGGCAACCAACCAGAGTGAATCTGAAGAAGAAGAACCCGTGGCTCGACCCGTTCGACGATGGACCTGACCCGGATATGGAGTACGGGTCACTCTT
TGCCGATGGCAAGCAAGACGAAGACGACAGGCCGCCTGAGAATCCAGACAACCCTTATGGATTCCTCAAGTTCCCGGCTGGATACAGCGTCGAAATTGCC
TCGATAGGGTTGAAAGTCAGAGGTGATGTCAGGGTGTGTTGCTGTGTCGTCGCTGGTGGTGTCTATGAGAACCTGCTCTTCTTCCCCACCATTCAGCTCC
TCAAGGACAGGTATCCTGGGGTTCAGATTGATGTGATAACGTCAGACAGAGGGAAGCAGGCTTATGAGCTGAATAAGAATGTGAGGTGGGCAAATGTATG
GGACATTGATGATGATTTCCCTTACCCTGCTGAGTATATGGATATGCTTGGAATTATCAGGGGGAGGTACTACGACATGATACTATCAACAAAAATAGCA
GGGCTAGGGCACGCAACATTCCTCTTCTTGTCCACTGCAAGAGACAGAGTCAGCTATGTGTACCCAAATGTAAATGCAGCGGGAGCTGGTCTAATGCTAT
CGGAGACCTTCACTGCAGACAGTTTGAACCTCTCCGAGAAAGGATACAATATGTACGAGGAGATGCTCGACTGGTTGGGGAAGCCGTTTCGGAGCGTTCC
CAGGACTCCAGTTCCTCCTCTGAGAGTGTCCATTTCTAAGAAGGTTAAGGCTGCTGTGGAGGCAAAATATAAGGCTGCTGGTGCTGAGATGGGGAAGTAT
GTAGTGATTCATGGGATTGAATCGGATTCCAAGGCCTCCATGCAGTCCAGAGGAGACACGGATAGCTTACTGTCGATTGATCAATGGGCTGACATTGCCG
ACTCTATAAGTGAATTGAAGCCAGTTTTCGTGATTCCACATGAGAAAGAACGGGAAAGTATAGAAGAAATTTTGGAGGATCCCAGTATAGTCTTCATCAC
AACTCCCGGCCAGCTGGCTGCTCTGATTAACGACTCTGCTGGAGTGATAGCTACAAACACAGCAGCAATCCAACTCGCAAATGCCCGTGGCAAACCCAGC
ATTGCACTGTTTTCCTCTGAAGAGAAGGCGAGACTGTTTGTTCCAAATGCAGAGGAGAAAAGATGCACCATCATATCATCGAAAACCGGCATACTCAAAG
ACATAGATGTTGGAGCTGTTATAAATGAAGTCAAGAAAGCTTTTGAACGCCCCCTTGCTCTGGTCTAG
AA sequence
>Lus10026086 pacid=23173312 polypeptide=Lus10026086 locus=Lus10026086.g ID=Lus10026086.BGIv1.0 annot-version=v1.0
MASTCLLPKPITQLFLKTPPSHSSPSSQFTTKPNQRQPTRVNLKKKNPWLDPFDDGPDPDMEYGSLFADGKQDEDDRPPENPDNPYGFLKFPAGYSVEIA
SIGLKVRGDVRVCCCVVAGGVYENLLFFPTIQLLKDRYPGVQIDVITSDRGKQAYELNKNVRWANVWDIDDDFPYPAEYMDMLGIIRGRYYDMILSTKIA
GLGHATFLFLSTARDRVSYVYPNVNAAGAGLMLSETFTADSLNLSEKGYNMYEEMLDWLGKPFRSVPRTPVPPLRVSISKKVKAAVEAKYKAAGAEMGKY
VVIHGIESDSKASMQSRGDTDSLLSIDQWADIADSISELKPVFVIPHEKERESIEEILEDPSIVFITTPGQLAALINDSAGVIATNTAAIQLANARGKPS
IALFSSEEKARLFVPNAEEKRCTIISSKTGILKDIDVGAVINEVKKAFERPLALV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G15980 PnsB1, NDH48, N... Photosynthetic NDH subcomplex... Lus10026086
[exp]
0 1
AT2G36145 unknown protein Lus10022687
[exp]
1.0 0.9588
AT4G24890 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE AC... Lus10016356
[exp]
1.4 0.9513
AT3G25480 Rhodanese/Cell cycle control p... Lus10001215
[exp]
2.6 0.9393
AT3G26710 CCB1 cofactor assembly of complex C... Lus10031981
[exp]
2.8 0.9455
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Lus10029979
[exp]
3.9 0.9477
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Lus10019771
[exp]
4.5 0.9328
AT3G52380 CP33, PDE322 PIGMENT DEFECTIVE 322, chlorop... Lus10013591
[exp]
4.9 0.9310
AT3G18890 AtTic62 translocon at the inner envelo... Lus10042346
[exp]
6.0 0.9431
AT1G20810 FKBP-like peptidyl-prolyl cis-... Lus10016037
[exp]
6.2 0.9303
AT1G54500 Rubredoxin-like superfamily pr... Lus10015945
[exp]
6.7 0.9434

Lus10026086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.