Plant FIBer expression Database

Lus10026087 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80860 250 / 2e-86 ATPLMT ARABIDOPSIS PHOSPHOLIPID N-METHYLTRANSFERASE, phospholipid N-methyltransferase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G044200
[exp]
259 / 7e-90 AT1G80860 279 / 7e-98 ARABIDOPSIS PHOSPHOLIPID N-METHYLTRANSFERASE, phospholipid N-methyltransferase (.1.2)
Potri.003G182400
[exp]
185 / 3e-61 AT1G80860 208 / 1e-70 ARABIDOPSIS PHOSPHOLIPID N-METHYLTRANSFERASE, phospholipid N-methyltransferase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF04191 PEMT Phospholipid methyltransferase
Representative CDS sequence
>Lus10026087 pacid=23173106 polypeptide=Lus10026087 locus=Lus10026087.g ID=Lus10026087.BGIv1.0 annot-version=v1.0
ATGGGGATTGTAGCGGCGATAGCTGTATTACTGCCGTTCCCGTTCTACTACTTTCTATGGACAAATCCGCAAGCATGGGTGAACTTCTGCGGGAGAAGTC
GGGACCCGAGCAAGCTGATGGCTCAAATCTCCCATTTCCTCAAGCTTCTCCAGTTCATTTCTCTCTACTCTGTCTCTTCTTCCCTTTCGTGGCCCCCTCT
CTGCTTCTGGCCGCTCTTTGTATTCGGCCAGTTCCTCAACTTCAGGGTATACCAATTGCTTGGAGAAGCTGGGACATACTACGGTGTGCGCTTTGGCAAG
AACATTCCTTGGGTGACTGAATTCCCATTTGGGGTTATAAGAGATCCACAGTACGTTGGAAGCGTTTTGAGCCTGTTGGCATGTCTACCTTGGGTTCCTT
TTCAGTACATTCTGTTATGGTGCCTCGGTTATTTCTTCATGATCCTCGTAGAATCGAAAGAGGATCCTACTACTCGAGCTAAGCCACTTGCTTGA
AA sequence
>Lus10026087 pacid=23173106 polypeptide=Lus10026087 locus=Lus10026087.g ID=Lus10026087.BGIv1.0 annot-version=v1.0
MGIVAAIAVLLPFPFYYFLWTNPQAWVNFCGRSRDPSKLMAQISHFLKLLQFISLYSVSSSLSWPPLCFWPLFVFGQFLNFRVYQLLGEAGTYYGVRFGK
NIPWVTEFPFGVIRDPQYVGSVLSLLACLPWVPFQYILLWCLGYFFMILVESKEDPTTRAKPLA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80860 ATPLMT ARABIDOPSIS PHOSPHOLIPID N-MET... Lus10026087
[exp]
0 1
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(... Lus10008680
[exp]
3.5 0.7846
AT5G37475 Translation initiation factor ... Lus10028057
[exp]
4.6 0.7594
AT4G15000 Ribosomal L27e protein family ... Lus10027314
[exp]
5.5 0.8189
AT5G24840 tRNA (guanine-N-7) methyltrans... Lus10026965
[exp]
6.9 0.7723
AT2G24050 eIFiso4G2 eukaryotic translation Initiat... Lus10035812
[exp]
9.5 0.7116
AT3G58660 Ribosomal protein L1p/L10e fam... Lus10024134
[exp]
9.5 0.7739
AT4G17520 Hyaluronan / mRNA binding fami... Lus10040157
[exp]
10.7 0.7201
AT4G18905 Transducin/WD40 repeat-like su... Lus10001126
[exp]
11.4 0.7374
AT4G15000 Ribosomal L27e protein family ... Lus10039017
[exp]
13.2 0.7823
AT1G78190 Trm112p-like protein (.1) Lus10032269
[exp]
14.0 0.6940

Lus10026087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.