Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 358 / 4e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 355 / 4e-120 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 311 / 4e-103 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 249 / 3e-79 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002314 [exp] 629 / 0 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10002468 [exp] 335 / 4e-112 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025191 [exp] 328 / 3e-109 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10016904 [exp] 175 / 1e-50 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10002313 [exp] 87 / 5e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044100 [exp] 468 / 1e-164 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 465 / 2e-163 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.007G054200 [exp] 367 / 2e-124 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G146100 [exp] 353 / 2e-119 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G074200 [exp] 283 / 3e-92 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G279400 [exp] 281 / 1e-91 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G144700 [exp] 256 / 1e-81 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10026088 pacid=23173218 polypeptide=Lus10026088 locus=Lus10026088.g ID=Lus10026088.BGIv1.0 annot-version=v1.0 ATGAGTACGTCGACGAGAGTAGCGGCGGTGGATGAGTTTCCGGCCGACGTTGAAGAGAGGAAGAGGTCGGCGGCGGAATGGGTGGTGGTGAGAGAGTTCG ACGGCGAGAGAGACACGGCGGAGGTGGAGGAGATGGAGCGGCGGTGCGAAGTTGGGCAACTTGTCACTGACCACATGGGCGACCCTATTTGTCGGGTTCG CTATTTCCCTTTGCATGTCATGATGGTAGCTGAGTTTGGGGAAGGAAGGGAAATAGTAGGAGTGGTAAGAGCGTGTATTAAAACGGTATCAAGAGGAGAA TCATCGAATATGAATGATTATGTCAAGTTGGCTTATATTCTCGGACTCAGAGTCTCTCCAACTCATAGGAGACTTAGTATAGGCGCAAAGCTAGTGTCCA AAGTAGAAGAATGGAGCAGACGAAACGGCGCCGTATACACATACATTGCAACCGATTGCACCAACCAACCTTCCATCAACCTCTTCACTGGCAAATTATC CTACACAAAATTCCGTACCCCGGCGATGCTAGTCCAGCCGGTGCACGCGCACCGCAAGTCCATACCATCCTCCACAGCAATCATTCAACTAACCCCACGC GCCGCCTCTCTAATCTACCGGAAGGTGTTCAAGTCCGCCGAATTCGTTCCCAAAGACATCGACTCGATCTTCTCCAACAAACTAAATTTAGGCACCTTCA TAGCCGTGTCCAAAAAACACGCGGACGGTACCAAAAGTAACACCCTTAGTAGTTGTACTGATCTACCGACGAGCTTTGCCATCATGAGCATTTGGAACAC GAAGGAAGTGTTTCGAATGCAAGTGAAGGGCGCGTCGAGGGTCAGCCGGGCTTGTTGTGCCGCGTCGTGGATGATGGACACGTGGCTACCGTGTCTGAAG CTGCCGTCGATCAACCCTAGAGTGTTCGGGGAGTTTGGAGTCCGGGTGGTGTACGGATTGCACATGGAAGGTGAAGGTGCGGGGAGGCTCATGAAAGCTT TGTGTGGGTACGCACACAATATGGCGATGAGTGACAAAGGGTGCGGCGGATTGGTCGTTGAGGTGGGCCCGCGGGACCCGGTGAGAAAGGTGGTCCCACA TTGGAGGAGGTTTTCCTGGGAGCAAGATATTTGGTGCATCAAGAAACTTGACGTAGAAGGAGAAGAGGGTGATTATGAGCCGTCCGATTGGGTGACATCT TCCGCGAAGTCGTCGCCAGTGATTTTCGTTGACCCTAGAGATTTCTGA
AA sequence Show only first row Show all	>Lus10026088 pacid=23173218 polypeptide=Lus10026088 locus=Lus10026088.g ID=Lus10026088.BGIv1.0 annot-version=v1.0 MSTSTRVAAVDEFPADVEERKRSAAEWVVVREFDGERDTAEVEEMERRCEVGQLVTDHMGDPICRVRYFPLHVMMVAEFGEGREIVGVVRACIKTVSRGE SSNMNDYVKLAYILGLRVSPTHRRLSIGAKLVSKVEEWSRRNGAVYTYIATDCTNQPSINLFTGKLSYTKFRTPAMLVQPVHAHRKSIPSSTAIIQLTPR AASLIYRKVFKSAEFVPKDIDSIFSNKLNLGTFIAVSKKHADGTKSNTLSSCTDLPTSFAIMSIWNTKEVFRMQVKGASRVSRACCAASWMMDTWLPCLK LPSINPRVFGEFGVRVVYGLHMEGEGAGRLMKALCGYAHNMAMSDKGCGGLVVEVGPRDPVRKVVPHWRRFSWEQDIWCIKKLDVEGEEGDYEPSDWVTS SAKSSPVIFVDPRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	1.0	0.9576
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10039277 [exp]	4.2	0.9061
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	5.7	0.9257
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	6.0	0.9289
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	8.7	0.9269
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	15.3	0.9206
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	17.3	0.9249
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	20.7	0.9103
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	21.2	0.9172
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	21.4	0.9180

Compare expression of checked genes

Lus10026088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.