Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73060 449 / 2e-158 LPA3 Low PSII Accumulation 3 (.1) AT5G48790 45 / 4e-05 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002315 [exp] 452 / 2e-158 AT1G73060 499 / 4e-177 Low PSII Accumulation 3 (.1) Lus10007599 [exp] 43 / 0.0004 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044000 [exp] 511 / 0 AT1G73060 529 / 0.0 Low PSII Accumulation 3 (.1) Potri.003G182801 [exp] 68 / 1e-14 AT1G73060 70 / 4e-16 Low PSII Accumulation 3 (.1) Potri.003G100300 [exp] 46 / 3e-05 AT5G48790 431 / 4e-153 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10026089 pacid=23173303 polypeptide=Lus10026089 locus=Lus10026089.g ID=Lus10026089.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCTAAAATGGCTTCCTCGCCGAACTCCGTCTCTTCAAGTCATTCCGGCCTCTCGATCTTCCCCTCACCTCTCCGTAACTCAACTCCTCTCT CACTTGCGCCGTCGACATCTGCCGCTCCGTGGCGCACGCGAAGTGGTGGCGGCATTGGAGCACTCCTCCGGCAGAACAATCGGCAATGGCGGAAATCAAT TAGAGCTCAAGCTGCTGTTACTCAAAGTAGCGGTAACGATCCGAAGAGTGGTGTAGCCGTTTACAAGCCTAAGTCCTACGAGGTTCTCGCCGCCGATGCC GCCAATTCGCTGGCCTTCGCAATTCAGGACGGCAAGCAAAGAATGGAAATCGATTTTCCGCCCTTACCTAGCGACATTTCTTCATACAAGGGGTCTTCAG ATGAGTTCATCGACGCCAACATTCAACTAGCATTGGCTGTTATCAGGAACCTGAAAGCGAGAGTCGAAACAAGAGCCTGCATTGTCGAAGGAATAACTGT TGGTTCACTTGATGATCTCCCTAGTGGTCCTGTCGACAATTTCTTCAAGTCTATCAGGAGCACCTTAGATTTCGATTTCGAAGAAGATAATGAAGGTCGT TGGCAGTCAGATGAGGCACCATCGCTTTATCTGTTTCTTAACTGCAGCACACGTGAATTATCTGGCATAGAGAAGTATGTGGAGAAATTTGCTTCGGCAA CCCCAACAGTTCTGTTCAATCTTGAACTTGATACGCTACGAGCTGACTTGGGTCTCTTTGGGTTTCCCACAAAAGATTTGCATTATCGGTTTCTGTCTCA ATATATCCCAGTTTTCTATATTCGAATTAGAGATTACTCAAAGACAGTAGCAATAGCACCTTACATCGTCAACTACAGTGGCGCCTTATTTCGTCAATAT CCAGGGCCTTGGCAGGTTATGCTCAAGCAGGCAGATGGTTCTTATGCTTGTGTAGCAGAGAGTAGTACACGCTTCACACTCGGCGAGACAAAAGAAGAAC TATTAAGGGTTCTCGGGCTTCAGGAGGAGCAGGGTAGCAATTTGCAGTTTCTTCGTAGAGGTTACAGGGCTGCTACTTGGTGGGAAGAAGACGTTGACTT GGAAGAATCTCAAGCATGGCGTAGCTGA
AA sequence Show only first row Show all	>Lus10026089 pacid=23173303 polypeptide=Lus10026089 locus=Lus10026089.g ID=Lus10026089.BGIv1.0 annot-version=v1.0 MALPKMASSPNSVSSSHSGLSIFPSPLRNSTPLSLAPSTSAAPWRTRSGGGIGALLRQNNRQWRKSIRAQAAVTQSSGNDPKSGVAVYKPKSYEVLAADA ANSLAFAIQDGKQRMEIDFPPLPSDISSYKGSSDEFIDANIQLALAVIRNLKARVETRACIVEGITVGSLDDLPSGPVDNFFKSIRSTLDFDFEEDNEGR WQSDEAPSLYLFLNCSTRELSGIEKYVEKFASATPTVLFNLELDTLRADLGLFGFPTKDLHYRFLSQYIPVFYIRIRDYSKTVAIAPYIVNYSGALFRQY PGPWQVMLKQADGSYACVAESSTRFTLGETKEELLRVLGLQEEQGSNLQFLRRGYRAATWWEEDVDLEESQAWRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	0	1
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	1.4	0.9588
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	4.2	0.9497
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	4.2	0.9357
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	5.5	0.9479
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	6.3	0.9426
AT3G15110			unknown protein		Lus10009195 [exp]	6.7	0.9343
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	8.1	0.9205
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	8.9	0.9348
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	9.2	0.9403
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	13.2	0.9350

Compare expression of checked genes

Lus10026089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.