Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179301 [exp] 51 / 5e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026090 pacid=23173238 polypeptide=Lus10026090 locus=Lus10026090.g ID=Lus10026090.BGIv1.0 annot-version=v1.0 ATGAAAATAAGCTTCATTTTAGTAGCTTTTCTGCTCTTGGCAACACAATCACTAGGCAACTGGGTGGAAACAGAGAAGCAGAGCAGAGGAGGAAGAGGCA GAGGAGGAACTAGAGGAAGAGGAAGAAGAAGTAACTGCGACCCATTCTTCCAATTCCTATTTGGAACCTGTGGCCAATGGCCTTTCCCTACTTCTCCATC TCCTGATAACCCTTTCAACCCCGCACCTCGCCGCCGCAATCCCCCGGGAACAACGGTTCCTCCCCCGGCGCCGATCCTCCCACCGCCCCCCCCCCCCCCC GCCTATTGCACCGCGTCTTCCGCCCATTCCGCTTGTCCCATCTCCTCCGCCTGCACCTGTGGTGGTTCCCTCGCCCCCACCAACTCCGGTGGTTTCTCCA CCGCCTTCTTCGCCTCCGCCATCTCCATCACCCCCTCCGCCGGCATCTCCTCCCCCGCCTCCTTTAGTTCCTTCTCCGCCGCCGCCCGCGTCACCCTGGC ACCACCGCCGCCGCTGGTGCCCATATTTGCTCCCCCGGCAGACGATGATTACACGATGCACTCCCCACCGCTGGTGCCTGATTTTAATACGCCACCTGAC CCGCCGGAAGAATTCGAGCCGCCGCCGAGTGATCAGGATTTCACTCCTCCGCCGCTGGTTTTCTTGTCTCCACCACCGGATGATAGCGGTAACGATCAGG ATCCGGATGGTCAAGGCGGATTTACACCCGTTCCACCGTTGGTTTTCTTGTCCCCGCCACCGCCGGATGACGGTGATGGTGATCAGCAGCCGGATCAAGG CGGCGGCTTTGCAACACCCGCTCCGCCGTTAGTGCCAATGTTCGAAACACCGCCAGAGCAAGATCAAGCTCCGCCAGAAGAGGTAACTCCAACTCCACTT GTACCGGTTTTCTCTTCTCCGCCACCGGCTGCCGACGATTTCTTCACACCGGAGGCTCCAGATTTTCCAGTTATACTATCACCACCGCCGGTTGATGAAA GTGATCCACTGCCGCCAGTGCCTGACGTCACACTGCCAGTTCCGGCTCCTCCTCTGGTGCCAGAAGTACCCTCGGATTATGACGTTTTCATCGGGACCGC CGGCGCCAGATTTTGA
AA sequence Show only first row Show all	>Lus10026090 pacid=23173238 polypeptide=Lus10026090 locus=Lus10026090.g ID=Lus10026090.BGIv1.0 annot-version=v1.0 MKISFILVAFLLLATQSLGNWVETEKQSRGGRGRGGTRGRGRRSNCDPFFQFLFGTCGQWPFPTSPSPDNPFNPAPRRRNPPGTTVPPPAPILPPPPPPP AYCTASSAHSACPISSACTCGGSLAPTNSGGFSTAFFASAISITPSAGISSPASFSSFSAAARVTLAPPPPLVPIFAPPADDDYTMHSPPLVPDFNTPPD PPEEFEPPPSDQDFTPPPLVFLSPPPDDSGNDQDPDGQGGFTPVPPLVFLSPPPPDDGDGDQQPDQGGGFATPAPPLVPMFETPPEQDQAPPEEVTPTPL VPVFSSPPPAADDFFTPEAPDFPVILSPPPVDESDPLPPVPDVTLPVPAPPLVPEVPSDYDVFIGTAGARF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026090 [exp]	0	1
					Lus10012012 [exp]	3.5	0.7846
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10018175 [exp]	3.5	0.7700
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	6.0	0.7190
AT4G04980			unknown protein		Lus10018473 [exp]	10.4	0.7296
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	13.3	0.7480
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	14.1	0.7064
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	15.9	0.7812
					Lus10038255 [exp]	18.7	0.7270
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	20.8	0.7094
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	29.1	0.7211

Compare expression of checked genes

Lus10026090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.