Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32000 419 / 2e-144 Protein kinase superfamily protein (.1.2) AT5G11020 414 / 2e-142 Protein kinase superfamily protein (.1) AT1G80640 411 / 2e-141 Protein kinase superfamily protein (.1.2) AT2G25220 405 / 4e-139 Protein kinase superfamily protein (.1.2) AT3G58690 261 / 3e-83 Protein kinase superfamily protein (.1) AT3G20530 240 / 2e-75 Protein kinase superfamily protein (.1) AT2G20300 248 / 8e-75 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT1G61860 239 / 8e-75 Protein kinase superfamily protein (.1) AT5G56890 250 / 1e-73 Protein kinase superfamily protein (.1) AT1G07870 235 / 8e-73 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002328 [exp] 689 / 0 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 388 / 2e-132 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10001937 [exp] 383 / 6e-130 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 289 / 4e-93 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 254 / 2e-79 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10033606 [exp] 250 / 5e-79 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 246 / 2e-77 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10004461 [exp] 243 / 4e-75 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10040050 [exp] 236 / 1e-73 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048500 [exp] 543 / 0 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 461 / 1e-161 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.006G260100 [exp] 385 / 8e-131 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 385 / 8e-131 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 256 / 3e-81 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 254 / 3e-80 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 251 / 1e-78 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 246 / 1e-77 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 249 / 6e-75 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 251 / 7e-75 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026091 pacid=23173176 polypeptide=Lus10026091 locus=Lus10026091.g ID=Lus10026091.BGIv1.0 annot-version=v1.0 ATGAACCTTCTTCCTCCTCTCTTCTTGTTGCCATTCTTCTTCCTCTCCATTGATGCCAGGCCCGACGCCACTTTCCCCCCATCCTCACTTCCTCCCAATA ACCAACCAGCTCCTCTGCTCTCCCCACAAACTGCAGCTTCATCTCCAGATATGGGTTTGGTCAGAGTAGTAGTGCACGGCCAAGACTTGAACAAGAAAAT CCTCATAGCACTGATTGTAGCTTCCACTCTGCTGGGTGTGATCTTGTTAACCCTGTCAATAAAATGGATCTACTGGCTTATTACCACCAAGGCCAAAAAC AGGCCAAATAAGTTAGAAGGTGGTGGTGCCAAAGGCTCTTCTTCCTTGGATCCGATTTCGGATTCGTTAAGTTCGTTGAGGCTGGCTGGGAAGAAGAAGA ACTCCATTGTGGTTATGGAGTATAAGTTGTTGGAAGGTGCAACCAACTGTTTCAATGAAGGCAATGTGCTTGGGGAAGGTTGTCATGGGCGTGTCTATGG TGCTTATTTTGACAAGAAGCTCTCTGCTGCTGTTAAGAGATTGGAAGGTAGAGGGCAAGATGTTGCGAGAGTGTTCGAGAATGAGGTGAAGTGGCTGACT AAGTTTGACCATCAGAACATAATTTCTGCGTTAGGCCACTGCTGTCACAATGGAACCAGGTTTCTGGTGTATGAAATGATGCAAAATGGGTCTTTGGAGA GTCAATTGCATGGAGCTACAAATGGAACAACATTGACTTGGCATCTTAGGTTGAAAATTGCAGTTGATGTTGCTAGGGGGCTAGAGTATCTTCATGAGCA TTGCAACCCTCCAGTTGTACATAGAGACATCAAATCATCCAACATTCTTTTGGATTCTGACTTCAATGCCAAGCTTTCAGACTTTGGGTTAGCAGCAACA TCTGGGAACCAAAACAAGAACATAACACTTAAAGGAACACTAGGCTACGTAGCCCCAGAGTACCTTCTCCACGGCGAACTGACAGAGAAAAGTGATGTAT ATGCATATGGGGTGGTTCTTCTTGAGCTCCTGACTGGAAGAAAGCCAGTAGAGGAATTGTCATCAGAACAGTGCCAATCATTAGTGTCATGGGCAATGCC CCAACTCACAGACAGAAATAAGCTTCCAGACATCGTGGACTCGACGATGAAGGATAGCATGGATCTCAAACATCTATACCAGGTGGCAGCAGTGGCGGTG TTGTGTGTGCAACAAGAACCAAGCTATAGGCCATTGATCACAGATGTTCTTCACTCCCTCATTCCTTTAGTACCTCTTGAGCTTGGAGGATCTCTAAGGA TCATTTACAGAGATGATGCCGACTAA
AA sequence Show only first row Show all	>Lus10026091 pacid=23173176 polypeptide=Lus10026091 locus=Lus10026091.g ID=Lus10026091.BGIv1.0 annot-version=v1.0 MNLLPPLFLLPFFFLSIDARPDATFPPSSLPPNNQPAPLLSPQTAASSPDMGLVRVVVHGQDLNKKILIALIVASTLLGVILLTLSIKWIYWLITTKAKN RPNKLEGGGAKGSSSLDPISDSLSSLRLAGKKKNSIVVMEYKLLEGATNCFNEGNVLGEGCHGRVYGAYFDKKLSAAVKRLEGRGQDVARVFENEVKWLT KFDHQNIISALGHCCHNGTRFLVYEMMQNGSLESQLHGATNGTTLTWHLRLKIAVDVARGLEYLHEHCNPPVVHRDIKSSNILLDSDFNAKLSDFGLAAT SGNQNKNITLKGTLGYVAPEYLLHGELTEKSDVYAYGVVLLELLTGRKPVEELSSEQCQSLVSWAMPQLTDRNKLPDIVDSTMKDSMDLKHLYQVAAVAV LCVQQEPSYRPLITDVLHSLIPLVPLELGGSLRIIYRDDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	1.7	0.9103
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10039918 [exp]	3.5	0.9018
AT4G12540			unknown protein		Lus10025820 [exp]	5.8	0.9094
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	6.5	0.9053
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	9.0	0.8958
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	11.2	0.9015
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	11.2	0.8891
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	13.0	0.9026
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	14.5	0.8910
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	15.4	0.8830

Compare expression of checked genes

Lus10026091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.