Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30230 42 / 8e-05 unknown protein AT1G29195 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002327 [exp] 233 / 1e-78 AT1G29195 47 / 1e-06 unknown protein Lus10025927 [exp] 69 / 2e-14 AT1G06980 43 / 4e-05 unknown protein Lus10036859 [exp] 68 / 5e-14 AT1G06980 41 / 1e-04 unknown protein Lus10038171 [exp] 63 / 2e-12 AT1G06980 46 / 2e-06 unknown protein Lus10006211 [exp] 62 / 6e-12 AT1G06980 39 / 9e-04 unknown protein Lus10020386 [exp] 61 / 6e-11 AT1G06980 44 / 3e-05 unknown protein Lus10009561 [exp] 59 / 7e-11 AT1G06980 44 / 1e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G179600 [exp] 107 / 3e-29 ND / Potri.002G217100 [exp] 67 / 2e-13 ND / Potri.002G242400 [exp] 67 / 3e-13 AT1G06980 45 / 9e-06 unknown protein Potri.010G046225 [exp] 64 / 2e-12 ND / Potri.008G186700 [exp] 63 / 2e-12 AT5G50090 41 / 1e-04 unknown protein Potri.001G048400 [exp] 59 / 5e-11 ND / Potri.014G170000 [exp] 48 / 8e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026092 pacid=23173286 polypeptide=Lus10026092 locus=Lus10026092.g ID=Lus10026092.BGIv1.0 annot-version=v1.0 ATGGCCAATTTCGGCAACTGTTTTTGCAACAAAAAGAGCAAGGTAGTCCGGATTGTATACCCAGGCGGTCACATCGAGCTCCACGACAATCCTATCCTCG CCGGAGACATCATGGCCAAGCACCCCAGATTCACGGTGGCCCGCCCAGAAGTGTTCCGGCAGCCGTTATCAGCGGTGGTTTCGCCGGAGACCACACTGAT GCTTGGCCAGAAATTCTATGCGGTCCCGACGAGTACCATCAGGAAGCTTCAGAGGAAGTACATTAAGAGTAACCCATCATCATCGGCTGAAGGTCATTAT CGTAATTGTGTTTATGATAATAGTAGTAAGAGGGGAGTTGGTTGCTTAAGCAACATGATTACAATGATGACCGGTTCGGGTCATCATCGTAATCACGATG TTAATGACGATCATCGTATGGTGCGGATTGTTTATAATGGGATCGTAGCTCCGACAGCAGCGGGAGCTTTGGATCACCGGCTGGGAAGAGATCACCGGCG TCGTCGCCAAAGAAAGGGATGCATATGGATTATTACTGGACACCAAATCTTGAAAGCATCACTGAATAAATCAGCTAGCTATATGGTAGGGATGTGA
AA sequence Show only first row Show all	>Lus10026092 pacid=23173286 polypeptide=Lus10026092 locus=Lus10026092.g ID=Lus10026092.BGIv1.0 annot-version=v1.0 MANFGNCFCNKKSKVVRIVYPGGHIELHDNPILAGDIMAKHPRFTVARPEVFRQPLSAVVSPETTLMLGQKFYAVPTSTIRKLQRKYIKSNPSSSAEGHY RNCVYDNSSKRGVGCLSNMITMMTGSGHHRNHDVNDDHRMVRIVYNGIVAPTAAGALDHRLGRDHRRRRQRKGCIWIITGHQILKASLNKSASYMVGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026092 [exp]	0	1
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	1.0	0.9404
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	1.4	0.9309
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	2.4	0.9292
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	3.7	0.8885
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	4.0	0.9183
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10004179 [exp]	4.1	0.8462
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10033054 [exp]	4.7	0.8326
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	5.9	0.8941
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	6.0	0.8915
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028928 [exp]	6.9	0.8469

Compare expression of checked genes

Lus10026092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.