Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15980 404 / 5e-135 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 402 / 3e-134 structural molecules (.1.2.3.4.5) AT1G52360 399 / 5e-133 Coatomer, beta' subunit (.1.2) AT2G21390 177 / 5e-50 Coatomer, alpha subunit (.1) AT1G62020 177 / 5e-50 Coatomer, alpha subunit (.1) AT3G49660 107 / 6e-27 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 102 / 7e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 92 / 1e-20 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 91 / 2e-20 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 91 / 3e-20 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002324 [exp] 575 / 0 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10033092 [exp] 386 / 1e-127 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 337 / 9e-116 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 333 / 2e-107 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037538 [exp] 175 / 2e-49 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 175 / 5e-49 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 174 / 6e-49 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 173 / 2e-48 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 172 / 5e-48 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250200 [exp] 399 / 2e-139 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 401 / 9e-134 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 397 / 2e-132 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.015G069700 [exp] 176 / 2e-49 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 176 / 2e-49 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.005G148500 [exp] 103 / 2e-25 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 102 / 4e-25 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 95 / 3e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 95 / 2e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 93 / 5e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026094 pacid=23173228 polypeptide=Lus10026094 locus=Lus10026094.g ID=Lus10026094.BGIv1.0 annot-version=v1.0 ATGAAAACCTTTTTCCAAGCTTCAGAGAGGGTCAAGTCAGTAGATTTCCATACATCTCAGCCGTGGATTTTGTCGAGCTTGCATTCAGGACAGGTCTGCA TTTGGAACTTCCACACTCAGGCACTGGTGAAGTCCTTCAAGGCCACGGATTCCCCAGTTAGAACAGCCAAGTTCATTCCAAGGAAGCAGTGGATTGTGAC AGGATCCGACGACGGAAAGATCCGGGTCTATGATGAAGATTCCTTTGAGCTTATTAAGGAGTTTGATGCTCACCAGGATTTCATCAGAAGTGTGGCTGTC CACCCCACGCTTCCGATCTTGATCTCAGCTTCTGACGACAAGGCTGTGAAGCAGTGGGATTGGGAGAAAGACTGGGAATGCACTCAAGTCTACGATGGAC ACTCGCATTACGTGATGCAGGTTGTGTTCAATCCACTGGATGCCAATACATTCGCAACTGCATCACTTGACAACTCCGTTAAGATATGGAATCTTGGATC CCCTGCTGCAGTTGGGTCGTTGGACGGACACCTGAAAGGAGTGAACAGTGTGGATTATTTGGTCTCCAAAGATGATCACAAACTGTACCTTCTGAGTGGC TCTGATGATTTCTCAGTTAAAGTCTGGGACTTGGAAACAAAAACTTGCGTCCAGACTCTGGAAGGCCACACGAACAACGTTTCAGCAGTGGCTTCCCACC CGGAGCTCCCAATCTTCATTTCCGGATCCGAAGATGGGACCATTAACATCTGGGATGCCACCACTTTCAAAGTTATCGAAACTTTGAACTACAGCCTGGA AAGAGTGTGGGCTGTTGGGTACAAGCATGGCTCAAAGCAGGTGGGATTTGGGTTCGACAAAGGGACTGTTATGGTGGATGTTACCAGCCTTTAG
AA sequence Show only first row Show all	>Lus10026094 pacid=23173228 polypeptide=Lus10026094 locus=Lus10026094.g ID=Lus10026094.BGIv1.0 annot-version=v1.0 MKTFFQASERVKSVDFHTSQPWILSSLHSGQVCIWNFHTQALVKSFKATDSPVRTAKFIPRKQWIVTGSDDGKIRVYDEDSFELIKEFDAHQDFIRSVAV HPTLPILISASDDKAVKQWDWEKDWECTQVYDGHSHYVMQVVFNPLDANTFATASLDNSVKIWNLGSPAAVGSLDGHLKGVNSVDYLVSKDDHKLYLLSG SDDFSVKVWDLETKTCVQTLEGHTNNVSAVASHPELPIFISGSEDGTINIWDATTFKVIETLNYSLERVWAVGYKHGSKQVGFGFDKGTVMVDVTSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	0	1
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	4.0	0.9574
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	5.5	0.9671
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	5.7	0.9635
AT5G57510			unknown protein		Lus10033559 [exp]	6.0	0.9630
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	6.6	0.9640
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	7.1	0.9524
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	9.2	0.9498
AT1G17860			Kunitz family trypsin and prot...		Lus10013770 [exp]	9.2	0.9605
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	10.7	0.9491
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	13.1	0.9397

Compare expression of checked genes

Lus10026094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.