Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80670 632 / 0 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G19590 217 / 5e-68 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 207 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 206 / 7e-64 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 121 / 9e-32 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 65 / 3e-11 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 64 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 63 / 7e-11 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G67320 62 / 3e-10 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002323 [exp] 698 / 0 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003954 [exp] 208 / 2e-64 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 199 / 8e-61 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026051 [exp] 101 / 3e-24 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014343 [exp] 100 / 6e-24 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 67 / 4e-12 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 66 / 1e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 62 / 2e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 62 / 3e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048100 [exp] 607 / 0 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G180000 [exp] 607 / 0 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G295100 [exp] 214 / 5e-67 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 206 / 8e-64 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 113 / 1e-28 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 103 / 5e-25 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G052700 [exp] 70 / 2e-13 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 9e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 68 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 66 / 6e-12 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026095 pacid=23173293 polypeptide=Lus10026095 locus=Lus10026095.g ID=Lus10026095.BGIv1.0 annot-version=v1.0 ATGGCGACCTTCGGTGCAGCCTCCGCCGGAAACACTAATCCGAACAAATCCTTTGAGGTGATTCAGCCCCCGACGGACTCCGTTTCCAGTCTCTGCTTCA GTCCTAAGGCAAACCACTTGGTGGCTACTTCGTGGGATAATCAGGTGCGATGTTGGGAAATCTCAAGGAATGCCAGCACTGCAACTAGTGCGCCCAAGGC ATCAATGTCACATGACCAGCCGGTGTTGTGCTCTGCCTGGAAGGATGATGGAACTACTGTTTTCTCCGGCGGCTGTGACAAACAAGTTAAGATGTGGCCG TTACTCTCAGGAGGCCAAGCTGTGACTGTAGCCATGCATGACGCACCAGTTAAAGAAGTAGCTTGGATCCCTGAGATGAGCCTCTTAGTGTCAGGCAGTT GGGATAAGACCTTGAAATACTGGGATACGAGACAGCCAAATCCAGTTCATACTCAGCAGCTTCCTGATCGTTGTTATTCTATGTCGGTGCGCCACCCACT TATGGTTGTGGGTACTGCAGACAGGAACCTCGTAGTCTTCAACCTGCAAAATCCTCAGGCCGAATTCAAGAGAATTCCTTCGCCACTGAAGTATCAGACA AGATGTGTAGCTGCATTCCCTGACCAGCAAGGATTTTTGGTTGGTTCGATAGAAGGAAGAGTTGGTGTACACCATCTTGATGATGCTCAGCAGGGTAAAA ACTTCACTTTTAAGTGCCACAGAGAATCAAATGACATCTACTCAGTGAACTCCTTGAACTTCCATCCGGTGCACCATACGTTTGCAACAGCAGGATCTGA TGGTGCTTTTAATTTCTGGGATAAGGACAGCAAACAGAGGCTAAAGGCTATGTCAAGGTGCAATCAGCCAATAACATGCAGTGCATTTAACAATGATGGC TCTATATACGCATATGCGGTTTGTTATGACTGGAGCAAAGGTGCTGAAAACCACAATCCAGCAACGGCAAAAACCAGCATCTTTCTCCATTTGCCACAGG AGTCGGAGGTGAAAGCAAAGCCCCGTGCTGCGACGAGTGGCAGAAGGTGA
AA sequence Show only first row Show all	>Lus10026095 pacid=23173293 polypeptide=Lus10026095 locus=Lus10026095.g ID=Lus10026095.BGIv1.0 annot-version=v1.0 MATFGAASAGNTNPNKSFEVIQPPTDSVSSLCFSPKANHLVATSWDNQVRCWEISRNASTATSAPKASMSHDQPVLCSAWKDDGTTVFSGGCDKQVKMWP LLSGGQAVTVAMHDAPVKEVAWIPEMSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRHPLMVVGTADRNLVVFNLQNPQAEFKRIPSPLKYQT RCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQGKNFTFKCHRESNDIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPITCSAFNNDG SIYAYAVCYDWSKGAENHNPATAKTSIFLHLPQESEVKAKPRAATSGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	0	1
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	1.7	0.8611
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	2.0	0.8855
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10041143 [exp]	8.0	0.8570
AT4G24630			DHHC-type zinc finger family p...		Lus10028737 [exp]	11.7	0.8071
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	12.5	0.8444
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	13.2	0.8101
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	13.6	0.8850
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	16.5	0.8459
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	21.9	0.8325
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10034172 [exp]	23.4	0.8311

Compare expression of checked genes

Lus10026095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.