Plant FIBer expression Database

Lus10026096 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80700 62 / 8e-12 unknown protein
AT1G80980 62 / 8e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002322
[exp]
202 / 5e-66 AT1G80700 119 / 1e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G180500
[exp]
72 / 4e-15 AT1G80700 137 / 3e-40 unknown protein
Potri.001G047700
[exp]
71 / 1e-14 AT1G80980 135 / 3e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10026096 pacid=23173203 polypeptide=Lus10026096 locus=Lus10026096.g ID=Lus10026096.BGIv1.0 annot-version=v1.0
ATGGCAAGTACGATGTTTCGCGCTAGGCTTACCTTGGCGCGATTGAAGCACCGTCAACTCTGCACCGGCACAGCTAAGCCCAACAACAAGAAGAAGGGAA
TCGGTGGTGACAATGGCGGTGATGGTAACAAGCAACCGTCGAGTGTTTCCAGATACAATGAAACGTACAGCCAGCTGGGAAAGCTCGACTTTATGACAGC
CGCCAAGATCCTCTTCACTGAGCCTCCAAAGAAGAAGTTTGGAGGAACAGTTCCTTGTATCTCTATGGGCAATTTGATGGATAAGTTAGTTGATCAGTGT
AATAGTTATATCTTTAACCTAATCACTTCATCTCAGTTTCAGGAACATCTGCTTACTTACATCCATCTTGTTTCAGGCTTGATTTTCACCTGGTACAACT
ATTCTTTGTCTGCTTGCCATCATTGGGATTTCCAGCACAAAAAGAAGAAAGAAGAAGAGATGAAAGCAAAAGAAGATGAGCAGAAAGCGAATGAATTAGA
AGAGAGGTCAAATGCTGCTCTATCAGAGATGAAAACGAGATTGGAGCAACTAGAAGTGGCCGTCAAGGAAATTGTGGTTGATAAAAAGAAAGGTAGCACC
AATGAAGATCAGCACGTTTCAAAAACCCAGTCAGGAACACCTTCCAAGTAA
AA sequence
>Lus10026096 pacid=23173203 polypeptide=Lus10026096 locus=Lus10026096.g ID=Lus10026096.BGIv1.0 annot-version=v1.0
MASTMFRARLTLARLKHRQLCTGTAKPNNKKKGIGGDNGGDGNKQPSSVSRYNETYSQLGKLDFMTAAKILFTEPPKKKFGGTVPCISMGNLMDKLVDQC
NSYIFNLITSSQFQEHLLTYIHLVSGLIFTWYNYSLSACHHWDFQHKKKKEEEMKAKEDEQKANELEERSNAALSEMKTRLEQLEVAVKEIVVDKKKGST
NEDQHVSKTQSGTPSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80700 unknown protein Lus10026096
[exp]
0 1
AT5G44710 unknown protein Lus10038399
[exp]
2.4 0.8782
AT3G08000 RNA-binding (RRM/RBD/RNP motif... Lus10031534
[exp]
6.6 0.8137
AT1G68680 unknown protein Lus10043296
[exp]
7.9 0.7924
AT1G43580 Sphingomyelin synthetase famil... Lus10028111
[exp]
9.3 0.8291
AT4G21720 unknown protein Lus10017512
[exp]
14.9 0.7702
AT4G36910 CBSX1, CDCP2, L... LOSS OF THE TIMING OF ET AND J... Lus10041576
[exp]
22.7 0.7919
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Lus10003862
[exp]
27.9 0.7550
AT2G37510 RNA-binding (RRM/RBD/RNP motif... Lus10003980
[exp]
29.9 0.8003
AT5G27870 Plant invertase/pectin methyle... Lus10020313
[exp]
31.1 0.7664
AT1G02820 Late embryogenesis abundant 3 ... Lus10027987
[exp]
45.7 0.7903

Lus10026096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.