Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 594 / 0 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 279 / 9e-90 HXXXD-type acyl-transferase family protein (.1) AT2G19070 241 / 9e-75 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G48720 216 / 1e-65 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 210 / 3e-63 HXXXD-type acyl-transferase family protein (.1) AT5G41040 205 / 2e-61 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 132 / 6e-34 HXXXD-type acyl-transferase family protein (.1) AT1G27620 127 / 3e-32 HXXXD-type acyl-transferase family protein (.1) AT1G65450 125 / 1e-31 HXXXD-type acyl-transferase family protein (.1.2.3) AT2G40230 112 / 7e-27 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002321 [exp] 604 / 0 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 510 / 2e-180 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 362 / 3e-122 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 361 / 8e-122 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 272 / 5e-87 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 266 / 7e-84 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 246 / 9e-77 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 246 / 2e-76 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10021393 [exp] 241 / 1e-75 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183900 [exp] 625 / 0 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 611 / 0 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 442 / 1e-153 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 405 / 6e-139 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 399 / 1e-136 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 384 / 1e-130 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 259 / 5e-82 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 255 / 3e-80 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 212 / 4e-64 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 208 / 1e-62 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026097 pacid=23173163 polypeptide=Lus10026097 locus=Lus10026097.g ID=Lus10026097.BGIv1.0 annot-version=v1.0 ATGAAAATCTCCGTCAAAGAATCGACGATGGTCCAGCCGGCGGAGGAGACCCCCAACGTGGGACTCTGGAACGCCAACGTTGACCTTGTGGTCCCCAGGT TTCACACCCCAAGCGTTTACTTCTACCGGCCGACTGGAGCGGCCGATTTCTTCGATCCCGACGCCATCAAGCGGAGGATGGGGAGAGCNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGATCAACTGTAATGCGGAAGCTTATTCCGGCTGTGGATTACTCC GGCGGGATCTCTACTTATCCTCTCTTGGTTCTCCAGGTGACATACTTCAAGTGCGGCGGAGTCTCACTGGGAGTCGGGATGCAACACCATGCCGCCGACG GCTTCTCCGGCCTGCACTTCGTCAACACATGGTCCGACATGTCCAGAGGACTCGACCTCACCCTCCCACCATTCATCGACAGGACACTCCTCCGTGCTCG GGACCCGCCCCGACCCGCTTTCCAGCACATCGAGTACCAGCCTCCTCCCTCCTTGAAAACCATCTCCTCCTCCGCCACCGCTGCATCCGATTCCGACGCA GTGAAAGCCTCCGACGCCGGCGTCAAGCCTCTGAAAGCCTCCGACGCCGGCGTCACGCCGCCAGCAGCTGTGTCGATATTCAAGCTGACCCGGGACGAGC TCAACGCCCTGAAAGCTAAATCGAAAGAAGCAGGAAACACCATCAGCTACAGCTCCTATGAAATGCTCGCCGGCCACGTCTGGCGGTGCGCCTGCAAAGC AAGGGGACTCGCCGACGACCAAGACACAAAATTGTACATCGCCACCGACGGCAGGTCCCGCCTCCGCCCTCCACTCCCCGAGGGATACTTCGGGAACGTG ATATTCACGACGACCCCGGTAGCTTCCGCCGGGGACCTGGCGAGCAACCCGACGTGGTTCGCGGCGGGTCGGATCCACGACGCTTTGGGGCGGATGGACG ATGAGTACTTGAGATCGGCGCTGGATTACCTGGAAGTGCAGCCGGATCTTTCGGCGCTGGTGAGAGGGGCCCATACTTTTAAGTGTCCGAACTTGGGGAT AACGAGTTGGGCCCGGCTGCCGATCCATGAGGCGGATTTCGGATGGGGTAGGCCCATTTTCATGGGCCCCGGTGGGATTCCGTTCGAAGGGTTGTCGTTT ATACTTCCGAGCTCTAACAAGGACGGGAGTATGTCTGTGGCGATATCGTTGCAGGGGGAGCATATGAAATTGTTTGAAAAGTTCATTTATGAGATCTAA
AA sequence Show only first row Show all	>Lus10026097 pacid=23173163 polypeptide=Lus10026097 locus=Lus10026097.g ID=Lus10026097.BGIv1.0 annot-version=v1.0 MKISVKESTMVQPAEETPNVGLWNANVDLVVPRFHTPSVYFYRPTGAADFFDPDAIKRRMGRXXXXXXXXXXXXXXXXXXXXXXLRSTVMRKLIPAVDYS GGISTYPLLVLQVTYFKCGGVSLGVGMQHHAADGFSGLHFVNTWSDMSRGLDLTLPPFIDRTLLRARDPPRPAFQHIEYQPPPSLKTISSSATAASDSDA VKASDAGVKPLKASDAGVTPPAAVSIFKLTRDELNALKAKSKEAGNTISYSSYEMLAGHVWRCACKARGLADDQDTKLYIATDGRSRLRPPLPEGYFGNV IFTTTPVASAGDLASNPTWFAAGRIHDALGRMDDEYLRSALDYLEVQPDLSALVRGAHTFKCPNLGITSWARLPIHEADFGWGRPIFMGPGGIPFEGLSF ILPSSNKDGSMSVAISLQGEHMKLFEKFIYEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	1.4	0.9747
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	2.0	0.9745
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	2.2	0.9725
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	3.9	0.9742
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	4.0	0.9728
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	4.9	0.9678
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10035681 [exp]	6.8	0.9445
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	6.9	0.9660
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	7.5	0.9505
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	8.7	0.9494

Compare expression of checked genes

Lus10026097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.