Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16030 504 / 1e-176 HSP70B heat shock protein 70B (.1) AT3G12580 501 / 1e-175 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 498 / 6e-175 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 491 / 2e-173 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 494 / 5e-173 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 491 / 1e-171 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 379 / 1e-127 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 369 / 3e-124 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 369 / 2e-123 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT4G37910 287 / 8e-92 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002319 [exp] 558 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 514 / 2e-180 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10009071 [exp] 501 / 3e-180 AT3G09440 561 / 0.0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10025276 [exp] 499 / 1e-174 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 498 / 2e-174 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 498 / 7e-172 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024393 [exp] 499 / 1e-161 AT5G02310 1770 / 0.0 proteolysis 6 (.1) Lus10017306 [exp] 373 / 2e-124 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 362 / 9e-123 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042600 [exp] 519 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 509 / 8e-179 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 506 / 1e-177 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 500 / 3e-175 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 500 / 3e-175 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 499 / 5e-175 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 497 / 4e-174 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 483 / 2e-168 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 421 / 5e-144 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G087500 [exp] 373 / 4e-125 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10026099 pacid=23173141 polypeptide=Lus10026099 locus=Lus10026099.g ID=Lus10026099.BGIv1.0 annot-version=v1.0 ATGGCGACGAAATCAGAGGGTAAGGCGATCGGAATCGACCTGGGCACCACCTACAGCTGCGTCGGAGTATGGCAGAATGATAGGGTGGAGATCATTGCTA ACGATCAAGGTAACCGCACTACTCCATCCTACGTGGCCTTCACCGACACTGAGAGGCTCATCGGAGATGCAGCCAAGAACCAGGTGGCGATGAACCCTCA TAACACAGTCTTCGACGCCAAGCGTCTCATCGGCCGGAAATTCACTGACCCTTCTGTGCAAGGCGACATGAAGCACTGGCCGTTTAAGGTCATCTCCGGC GCCGGAGATAAGCCGATGATCGTGGGCAATTACAAAGGCGAGGACAAGCAGTTCGCTCCTGAAGAGATTTCATCCATGGTTTTGATTAAGATGAGGGAGA TTGCTGAGGCCTTCTTGGGTCAGAGCATTAAGAATGCTGTGGTCACCGTTCCGGCTTATTTCAACGACTCTCAGAGGCAGGCGACGAAAGATGCTGGTTC GATTGCTGGTCTGAATGTTCTGAGGATCATCAACGAGCCGACTGCCGCTGCAATTGCTTATGGACTCGACAAGAAAGCGTCGAGAAGCGGGGAGAAGAAT GTTCTGATCTTCGATCTCGGTGGAGGGACTTTTGATGTTTCTCTGTTGACGATTGAGGAAGGGATATTCGAAGTGAAGGCTACGGCGGGAGATACGCATC TAGGAGGTGAGGATTTCGATAATCGGCTGGTGAATCATTTTGTATCGGAGTTCAAGAGGAAGAACAAGAAGGATATCAGCAGTAACGCTAGGGCTTTGAG GCGGTTGAAAACCCCCCGGGGAAGGGAGGAGAGGCACCTGTTTTCTACAAAAGGGCGAAGAGGACTCTGTCTTCTACCTCCCAGACGACGATTGAGATCG ATTCGTTGTACGAAGGAATCGATTTCTACTCGTCGATTACCAGGGCGAGGTTCGAGGAATTGA
AA sequence Show only first row Show all	>Lus10026099 pacid=23173141 polypeptide=Lus10026099 locus=Lus10026099.g ID=Lus10026099.BGIv1.0 annot-version=v1.0 MATKSEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFTDPSVQGDMKHWPFKVISG AGDKPMIVGNYKGEDKQFAPEEISSMVLIKMREIAEAFLGQSIKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKN VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVSEFKRKNKKDISSNARALRRLKTPRGREERHLFSTKGRRGLCLLPPRRRLRS IRCTKESISTRRLPGRGSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	1.0	0.9952
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	1.4	0.9839
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	3.5	0.9752
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	4.0	0.9704
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	5.5	0.9639
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	5.5	0.9679
AT5G07330			unknown protein		Lus10042036 [exp]	9.5	0.9221
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	10.2	0.9599
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	10.4	0.9495
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	11.5	0.9419

Compare expression of checked genes

Lus10026099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.