Plant FIBer expression Database

Lus10026102 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002317
[exp]
108 / 9e-30 ND 37 / 0.006
Lus10038938
[exp]
85 / 4e-19 AT1G49790 63 / 7e-11 F-box associated ubiquitination effector family protein (.1.2)
Lus10014979
[exp]
81 / 9e-18 AT1G33530 57 / 6e-09 F-box family protein (.1)
Lus10018460
[exp]
51 / 2e-07 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1)
Lus10034309
[exp]
0 / 1 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1)
Lus10003705
[exp]
0 / 1 AT4G38870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10026102 pacid=23173259 polypeptide=Lus10026102 locus=Lus10026102.g ID=Lus10026102.BGIv1.0 annot-version=v1.0
ATGGGACTGATGGGACTCATGATCATCTACTTCACATCACTTTCTGCGCTCCTGCTTCTTGCCCTGCTTCCAACTGAAGCCAGAACTTTCCCAGCTCTTA
CTAAATATGATGTTGATCACCCATACTCAAATGATGATGATGGTAAGGAGATGGAGGGAAGGGTATCAAGACCTGGCCCCATCCCTAAGCCTACACCACC
ATCTCCAAAACCCGATACCCCAATAACTGAGCTCACCTCTGATCATATTACCGGCGCCGGAGAAGTAGTAACTCCGTTTGACGAGGGAGAAGGAAGGAAG
AAATTAACACCACCACCGGCTCCGAAGCCCGATTCACCTACCCATTACATTGCTCCGAGGGAAAGGGCTCCTCCTTCCGCCGCCATGTGGAAGTTTCATG
ACTGTAACAAGGAGAATGGCAGTAGTTGGGAAAAAGACTGGAGTGAAGTGGAGGATATCAAGCTACCTTCTGTTATAACTTCTGATGTCTTTCTTTACTT
TCACCCGATACCTACAAAAAGGCCAGCTGATGTTTTCCCGCTTTTATTCATACAATCTGACAAAGAAGACTTTCAGCAGGTTAAGACTCGACGGGAGTTT
CCTCTATTCCGGATGATTGCAAGACCACCTGTGCACCTCTGGTAG
AA sequence
>Lus10026102 pacid=23173259 polypeptide=Lus10026102 locus=Lus10026102.g ID=Lus10026102.BGIv1.0 annot-version=v1.0
MGLMGLMIIYFTSLSALLLLALLPTEARTFPALTKYDVDHPYSNDDDGKEMEGRVSRPGPIPKPTPPSPKPDTPITELTSDHITGAGEVVTPFDEGEGRK
KLTPPPAPKPDSPTHYIAPRERAPPSAAMWKFHDCNKENGSSWEKDWSEVEDIKLPSVITSDVFLYFHPIPTKRPADVFPLLFIQSDKEDFQQVKTRREF
PLFRMIARPPVHLW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026102
[exp]
0 1
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Lus10007633
[exp]
1.0 0.9193
AT4G03230 S-locus lectin protein kinase ... Lus10031591
[exp]
1.4 0.9133
AT5G01550 LECRKA4.2 lectin receptor kinase a4.1 (.... Lus10022662
[exp]
1.7 0.9080
AT1G71890 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Ma... Lus10028616
[exp]
7.2 0.8879
AT5G48370 Thioesterase/thiol ester dehyd... Lus10002148
[exp]
7.7 0.8866
AT1G75820 ATCLV1, FLO5, F... FLOWER DEVELOPMENT 5, FASCIATA... Lus10017267
[exp]
15.7 0.8351
AT5G52450 MATE efflux family protein (.1... Lus10029668
[exp]
16.2 0.8802
AT5G10770 Eukaryotic aspartyl protease f... Lus10020100
[exp]
16.4 0.8745
AT5G44670 Domain of unknown function (DU... Lus10036247
[exp]
16.5 0.8785
AT4G12320 CYP706A6 "cytochrome P450, family 706, ... Lus10032217
[exp]
18.3 0.8602

Lus10026102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.