Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79690 1090 / 0 ATNUDT3 nudix hydrolase homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002329 [exp] 1017 / 0 AT1G79690 800 / 0.0 nudix hydrolase homolog 3 (.1) Lus10024090 [exp] 886 / 0 AT1G79690 885 / 0.0 nudix hydrolase homolog 3 (.1) Lus10041626 [exp] 543 / 0 AT1G79690 490 / 4e-166 nudix hydrolase homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185600 [exp] 1156 / 0 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185776 [exp] 1152 / 0 AT1G79690 1214 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185951 [exp] 1150 / 0 AT1G79690 1218 / 0.0 nudix hydrolase homolog 3 (.1) Potri.001G037000 [exp] 48 / 2e-05 AT5G23570 97 / 3e-21 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 46 / 0.0001 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain CL0126 [flax] [poplar] Peptidase_MA PF03571 [flax] [poplar] Peptidase_M49 Peptidase family M49
Representative CDS sequence Show only first row Show all	>Lus10026103 pacid=23173172 polypeptide=Lus10026103 locus=Lus10026103.g ID=Lus10026103.BGIv1.0 annot-version=v1.0 ATGGATAAAATCCAATTGCAGCACCGAGACAGTACTGAAGCGATGGATTTCCAAGAGCAGTTCTTCAAGGATCGAATCAGAAGCATTCTTGAGGGAAATG ATGCTGCTGCTGATGATGATGGAAAGGAAGGGTTGGAAGAGAAGATAGAAACTGGGGAATGCAATTCTCCTCCAAAATCAAGCTCGTCATCAGCTGGATG TTCTTCAGATGGAGGAGCTGTTCATCGGGATGGAGACTACCACAGGGCAGTTCACGTTTGGATTTTTTCTGAAAGCACCCAGCAGCTTCTTCTCCAGAAG CGTTCAGACTGCAAGGATTCATGGCCTGGGCAGTGGGATATATCCAGTGCTGGTCATATATCTGCAGGTGATTCGTCGCTTGTATCAGCTAGGCGGGAGC TTGAAGAGGAGCTAGGCATCCGCCTTCCAAGAGATGCATTTGAGTTGCTGTTCGTTTTCCTTCAGGAGTGTGTGACGAATGGTGGGAAATTCATCAATAA TGAATTTAACGATGTGTATCTTGTGACAACAACAGATCCTATTCCTTTGGAAGCCTTTACTCTTCAGGAATCCGAAGTTTCTGCCGTTAAGTATATTTCT TATGAGGAGTACAGAAGTTTATTAGCTAAAGAAAATCCCGGTTATGTCCCGTATGATGTGAATGGGCAGTATGGTCAGCTCTTTCAAATAATTGCTCAAA GACAGCAGAACGTTAGTACTTACACAATTCATTTCTTTTTTCGCTGTGTGTCATTTTCTAAGCTGACAGGGCTAACAGAGGCAGACAAGGAGGCGTTAAT TTTGATAATGAAGGCTGCAAAAATCATGGATGATATCTTCTATCTCCAGGTTTGGGAGAGCAATCCGGTTTTGAGAGATTGGTTGATTAAACATGCTGAT GTTTCAGAACTCGACAGACTAAAATGCAAATACTATATGATCAACAAGGGCCCATGGTCCTGTCTTGATGAGAATCAGCCTTTTTTGACGACCAAAGACT CAGCTCGAAAGTTGATTCCTGAAGCCACAAAATCAGTGAGTGGATGGAAAGGTCTGGAGTATAAAGCGGCATTTCCTACTCTGAAACCACCTGGTGCAAA CTTCTACCCTCCAGACATGGACAAAATGGAATTTGAATCATGGAAGAACAACTTGTCAGAAGAAGATGAGGCAACGAGCTTTTTCACAGTTATAAAAAGG CACAGTGAAAGTTCCTCATCTTTGGATCATACAACGAGCAACAAAAGTCGCTTGGCAGGATATGGGGATCTGTATACTGTTCCATACTCTGTAGAATACA AAGCTTTCCTCACTAATGCTTCTGACCTTTTGCATAAAGCAGGTGACTTAGCCAGCTTGCCAAGTTTGAAGAGGTTTCTTCATAGCAAGGCTGATGCGTT CCTGTCAAATGACTATTATGATTCCGACATTGCCTGGATGGAATTGGATTCTAAGCTTGATGTTACAATAGGTCCATACGAGACATATGAAGATTCACTT TTTGGATACAAGGCTACATTTGAAGCATTTGTTGGGATTCGAGATGACGAGGCTACAGCTCAACTGAAAATGTTTGGTGATAATTTGCAGATTTTGGAGG AAAATCTTCCAATGGATAACATTTACAAATCAACAGACATTAATGTTGCTCCTATACGTGTCATAAAACTACTTTATAATGCTGGGGATGTTAAAGGTCC TCAAACTGTTGCTTTCAATCTACCGAATGATGAGCGAATAGTGAACGATCGGGGAACTTCAATGGTTATGCTTAAGAATGTTTCTGAGGCCAAGTTCAAA CACATTCTCCGACCTATAGCTGATGTATGTATCTCTAAGGAGCAAAACCACCTTGTAGACTTTGATTCATTCTTTACTCATACCATCTGTCATGAGTGCT GCCATGGTATTGGACCTCACACCATAGTTCTTCCAGATGGTCAGAAGTCCACAGTAAGAAAGGAGCTTCAAGAACTCCACTCTGCTTTGGAAGAAGCTAA AGCTGATATAGTTGGACTCTGGGCACTCAAGTTTATGATCTGTCAGGGCTTGCTGCCAAAGAGTTTGGAAGAGTCGATGTATGTTTCTTTCCTAGCAGGA TGCTTCCGCTCAGTTCGATTCGGCTTGGAAGAAGCTCATGGAAAAGGAGAAGCTTTGCAGTTCAACTGGCTGTTCGAGAAAGGAGCCTTCAAGTTGCATC CAGACGAGACTTTCTCTGTCGATTTTGCAAAGGTTGACGAGGCGGTAAAAAGCTTGAGCTCTGAGATACTTACCATCCAGGCAAAGGGTGACAAAAACGC TGCAAGCTTACTCCTCCAGAAATACTGCGAAATGACTCCTCCGTTGAAACTTGCATTGTTGAAACTGGAGAGTATTCAGGTGCCGGTGGACATAGCTCCC AGTTTCCCCTTAGCAACTGAGTTACTGCAGCAATGA
AA sequence Show only first row Show all	>Lus10026103 pacid=23173172 polypeptide=Lus10026103 locus=Lus10026103.g ID=Lus10026103.BGIv1.0 annot-version=v1.0 MDKIQLQHRDSTEAMDFQEQFFKDRIRSILEGNDAAADDDGKEGLEEKIETGECNSPPKSSSSSAGCSSDGGAVHRDGDYHRAVHVWIFSESTQQLLLQK RSDCKDSWPGQWDISSAGHISAGDSSLVSARRELEEELGIRLPRDAFELLFVFLQECVTNGGKFINNEFNDVYLVTTTDPIPLEAFTLQESEVSAVKYIS YEEYRSLLAKENPGYVPYDVNGQYGQLFQIIAQRQQNVSTYTIHFFFRCVSFSKLTGLTEADKEALILIMKAAKIMDDIFYLQVWESNPVLRDWLIKHAD VSELDRLKCKYYMINKGPWSCLDENQPFLTTKDSARKLIPEATKSVSGWKGLEYKAAFPTLKPPGANFYPPDMDKMEFESWKNNLSEEDEATSFFTVIKR HSESSSSLDHTTSNKSRLAGYGDLYTVPYSVEYKAFLTNASDLLHKAGDLASLPSLKRFLHSKADAFLSNDYYDSDIAWMELDSKLDVTIGPYETYEDSL FGYKATFEAFVGIRDDEATAQLKMFGDNLQILEENLPMDNIYKSTDINVAPIRVIKLLYNAGDVKGPQTVAFNLPNDERIVNDRGTSMVMLKNVSEAKFK HILRPIADVCISKEQNHLVDFDSFFTHTICHECCHGIGPHTIVLPDGQKSTVRKELQELHSALEEAKADIVGLWALKFMICQGLLPKSLEESMYVSFLAG CFRSVRFGLEEAHGKGEALQFNWLFEKGAFKLHPDETFSVDFAKVDEAVKSLSSEILTIQAKGDKNAASLLLQKYCEMTPPLKLALLKLESIQVPVDIAP SFPLATELLQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10026103 [exp]	0	1
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10034442 [exp]	2.0	0.7975
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10030080 [exp]	10.2	0.7451
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10026435 [exp]	10.2	0.7177
AT3G27250			unknown protein		Lus10014610 [exp]	13.4	0.7226
AT3G13845			unknown protein		Lus10015617 [exp]	14.3	0.7234
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	20.3	0.7279
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	29.5	0.6892
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	30.0	0.6515
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	32.4	0.7242
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	39.9	0.6863

Compare expression of checked genes

Lus10026103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.