Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14250 218 / 1e-68 RING/U-box superfamily protein (.1) AT3G53690 201 / 3e-62 RING/U-box superfamily protein (.1) AT5G37560 148 / 1e-40 RING/U-box superfamily protein (.1) AT4G19670 135 / 2e-35 RING/U-box superfamily protein (.1.2) AT3G45580 120 / 1e-30 RING/U-box protein with C6HC-type zinc finger (.1) AT5G60250 121 / 3e-30 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G26135 119 / 3e-30 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45470 115 / 3e-30 IBR domain containing protein (.1) AT2G25360 118 / 5e-30 RING/U-box superfamily protein (.1) AT2G21420 119 / 8e-30 IBR domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000412 [exp] 585 / 0 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10024093 [exp] 288 / 1e-96 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10036128 [exp] 130 / 2e-33 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 127 / 2e-32 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 124 / 3e-31 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10022063 [exp] 113 / 5e-29 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10036127 [exp] 107 / 2e-25 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042610 [exp] 102 / 1e-24 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10022064 [exp] 78 / 1e-17 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037200 [exp] 306 / 1e-103 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 292 / 1e-97 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 197 / 7e-60 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 137 / 1e-38 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 127 / 1e-34 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 133 / 2e-34 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G123500 [exp] 124 / 2e-33 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.015G117600 [exp] 123 / 3e-31 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 120 / 4e-30 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 117 / 4e-29 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10026104 pacid=23173136 polypeptide=Lus10026104 locus=Lus10026104.g ID=Lus10026104.BGIv1.0 annot-version=v1.0 ATGTCCCAATCACAGCAGATTCTACTCCAGACGGAGGAATCTCTTCCTCAGCCCACCCTCTCTGATCTCAATTTCGTCGACGATTCCTACTTCGTTTCAC TCTTCAACGACGACGAACAAGACGCCGCCGCCGCGTTGGTGATTCATCAACCACCACCACCACAACCACAAGTCGAGGAAGTTGACGTACTGGGGGAGAT CATCTTCCCTGTCTCCGACGCCAAATACGCCGAGGGATTGCAAGTCCAAGAGGCTCTAGTCGGTTCATTCGCTCTCTCCTACCACGCCACTCCCGAAATC GATTTTCGTCCTTTAGACTTCATGGTCATGGAATCGGAAGCGATTGAGATTGTCCATGGGAAGCGGATGAAGGTTGTGGAAGAAGAAGAAGAGGATCAAG ATGAAGGGGAGTCGTCGCTGAGCTTCTGCGAGATTTGCGCGGACAGGAAAGAGCCGGAGCACATGCTGAAAATTGGCGGCGGGTGCTCTCACGCTTCCTA CTGCTCCGATTGCATAGCCCGCCACGTGACGACTAAAGTCAGCGAGAGCGTCGTCACGGTGACCTGCCCCGCGGCGGGGTGCGGGACGGTGCTGGAGCTT GAAACATGCCGGCCGGTGCTTCCGAAGCGAGTGATCGAACAGTGGGAGGAGGTTCTCTGCCGAGAGCTGATTGGAGAATTGCAGAGGTACTACTGCCCGT TCAGGGACTGTTCTGCAATGCTGCTGGTGGAAGCCGGGGAGGAGTTGATTCGAGAATCGGAGTGTCCGTACTGCCACAGGCTGTTCTGCGTACAGTGCGG TGTGCCGTGGCATTCAGGGGTAGATTGCGAGGCGTTTCAGAATCTGGGACAAGACGAGAGAGGTAGGGAGGATATAATGGTGATGGAAATGGCTAAGAGC AACAAATGGAGTCGATGCCCTCGGTGTATGTTCTATGTTGAGAGAACTGAAGGCTGCCCTCACATCACTTGCAGGTGCAAGTATGAGTTCTGCTATGGAT GTGGAGCTGAGTGGAGCAAGAATCATGGTGGGTGCACCAGAGATTAA
AA sequence Show only first row Show all	>Lus10026104 pacid=23173136 polypeptide=Lus10026104 locus=Lus10026104.g ID=Lus10026104.BGIv1.0 annot-version=v1.0 MSQSQQILLQTEESLPQPTLSDLNFVDDSYFVSLFNDDEQDAAAALVIHQPPPPQPQVEEVDVLGEIIFPVSDAKYAEGLQVQEALVGSFALSYHATPEI DFRPLDFMVMESEAIEIVHGKRMKVVEEEEEDQDEGESSLSFCEICADRKEPEHMLKIGGGCSHASYCSDCIARHVTTKVSESVVTVTCPAAGCGTVLEL ETCRPVLPKRVIEQWEEVLCRELIGELQRYYCPFRDCSAMLLVEAGEELIRESECPYCHRLFCVQCGVPWHSGVDCEAFQNLGQDERGREDIMVMEMAKS NKWSRCPRCMFYVERTEGCPHITCRCKYEFCYGCGAEWSKNHGGCTRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	0	1
AT2G38430			unknown protein		Lus10030356 [exp]	1.7	0.7325
AT1G10820			Protein of unknown function (D...		Lus10029076 [exp]	2.8	0.6811
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	4.9	0.6832
					Lus10004635 [exp]	6.0	0.7011
					Lus10008678 [exp]	8.1	0.6629
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	13.4	0.6341
AT3G14250			RING/U-box superfamily protein...		Lus10000412 [exp]	13.8	0.6110
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020440 [exp]	15.9	0.6310
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	26.7	0.5947
					Lus10009381 [exp]	30.4	0.6061

Compare expression of checked genes

Lus10026104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.