Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19370 231 / 4e-75 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) AT1G26550 49 / 3e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000413 [exp] 417 / 1e-147 AT5G19370 240 / 1e-77 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Lus10015714 [exp] 51 / 1e-07 AT1G26550 224 / 1e-76 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10019084 [exp] 50 / 1e-07 AT1G26550 225 / 4e-77 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069300 [exp] 275 / 1e-92 AT5G19370 281 / 3e-94 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Potri.008G089900 [exp] 46 / 4e-06 AT1G26550 214 / 1e-72 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00639 [flax] [poplar] Rotamase PPIC-type PPIASE domain
Representative CDS sequence Show only first row Show all	>Lus10026105 pacid=23173157 polypeptide=Lus10026105 locus=Lus10026105.g ID=Lus10026105.BGIv1.0 annot-version=v1.0 ATGCTCAGAGCATCGCGGCTATCTTTCTATGCTCTGATGCCTTCCCTGATTCAAATCCGTCCTTCTTCTCATCTTTGTAAACATTCTGTTTCTCTTCCTT ACCCTTCTTCTTCTTCGTCATTCATAAACCCACTCTCCACAAGAACCCTCACATCTCTGCCTTCTATTTCATTCAATCGCCTCCCTTTCACTATGCTCAA TCATCATGCATGCCCCAGAGCTTCATTCAGCTCTCAGAGTGACTCCGCCGCTGATAAGGAACTCTTGGTACAGCACTTGCTTGTCAAAGCAGATGATCCT ATGCTTATAGTGGACCTACAAAAGAGAGTTTTCGCAGGAGAGGATTTGAGTGACCTTGCTGTTGAGTACTCCATTTGTCCGTCCAAAGAAGAGGGTGGAA TGCTTGGATGGGTCAGAAAGGGGCAAATGGTGCCTGAATTTGAGGAAGCGGCCTTTACTGCCCCTCTAAATAAAGTTGTGCGGTGTAAAACTCAGTTTGG ATGGCATTTGCTGCAAGTTCTCTCCCAAAGAGACGCATGCGCACTTCGAGAAATTCAACCAGATGAATTTCATGTCAAGTTCCAAGATCCTGACTTTCTT CAGGAGGCTCAGTTGATTGATGTCCGGGAACCTGATGAAGTAGCCAAAGCATCATTGGCTGGTTTTGAAGTTCTTCCACTGCGTCAATTTGGAACTTGGG GTCCAGAAATCACAACGAAGCTCGATCCTGGGAAGGATACATATGTTATGGACCTCAGTTGCAGTGCTTTCTGGATTTCCTCTCAATTATTTGGGATCAG TTAG
AA sequence Show only first row Show all	>Lus10026105 pacid=23173157 polypeptide=Lus10026105 locus=Lus10026105.g ID=Lus10026105.BGIv1.0 annot-version=v1.0 MLRASRLSFYALMPSLIQIRPSSHLCKHSVSLPYPSSSSSFINPLSTRTLTSLPSISFNRLPFTMLNHHACPRASFSSQSDSAADKELLVQHLLVKADDP MLIVDLQKRVFAGEDLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNKVVRCKTQFGWHLLQVLSQRDACALREIQPDEFHVKFQDPDFL QEAQLIDVREPDEVAKASLAGFEVLPLRQFGTWGPEITTKLDPGKDTYVMDLSCSAFWISSQLFGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19370			rhodanese-like domain-containi...		Lus10026105 [exp]	0	1
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	1.0	0.8626
AT1G76405			unknown protein		Lus10025161 [exp]	2.8	0.8506
AT5G02280			SNARE-like superfamily protein...		Lus10010836 [exp]	3.7	0.8226
AT5G53500			Transducin/WD40 repeat-like su...		Lus10012846 [exp]	6.9	0.8163
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	8.0	0.8440
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	8.7	0.8479
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	9.7	0.8323
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	12.5	0.8067
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	15.0	0.8137
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10008593 [exp]	15.9	0.7833

Compare expression of checked genes

Lus10026105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.