Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 484 / 8e-174 Galactose mutarotase-like superfamily protein (.1) AT3G61610 402 / 2e-141 Galactose mutarotase-like superfamily protein (.1) AT5G14500 392 / 2e-137 aldose 1-epimerase family protein (.1) AT3G01590 391 / 3e-137 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 369 / 8e-129 Galactose mutarotase-like superfamily protein (.1) AT4G25900 342 / 1e-117 Galactose mutarotase-like superfamily protein (.1) AT5G66530 139 / 9e-39 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000414 [exp] 636 / 0 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 568 / 0 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 516 / 0 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 500 / 4e-180 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 414 / 2e-146 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 411 / 5e-145 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 398 / 3e-140 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 398 / 5e-140 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 390 / 9e-137 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037700 [exp] 523 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 520 / 0 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 518 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 511 / 0 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 412 / 3e-145 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 396 / 3e-139 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 385 / 6e-135 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 142 / 7e-40 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 51 / 5e-07 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 42 / 0.0004 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10026106 pacid=23173308 polypeptide=Lus10026106 locus=Lus10026106.g ID=Lus10026106.BGIv1.0 annot-version=v1.0 ATGTCGATTGTTGGCGGCGTAGGCGAGGAAAACAAATTCGTCGAGTTCTGTAAGGGCGTTAATGGCCTCGATAAGGTCATCCTCCGCGAGGTTCGTGGCC ATTCTGCCGAGGTTTACCTGAATGGAGGTCAAGTTACATCTTGGAAGAATGAATATAGAGAAGAATTACTATTTCTTAGTAGCAAGGCTGTTTTCAACCC TTCAAAGGCAATAAGAGGAGGTATCCCAATTAGCTTTCCTCAATTTGGAACTCATGGTTCCCTTCAACAACACGGATTTGCAAGAAACACAGTTTGGACT GTTGATAAAGATCCCCCTCCTTTTCCAACAGTTAGTTCGAATAGGGCTTTTGTGGATTTAATACTTAAACCATCTGAAGATGATCCAAAGAGCTGGCCTC ACAGATTTGAATTCCGGATAAGGATAGCTCTGGGGCCAGGTGGAGATCTGATGCTGACCTCCCGAATCCGGAATACAGAGACTGACGGGAAACCTTTTAC ATTTACCTTTGCCTATAACACCTATTTCTCTGTCACTGATATCAGTGAAGTACGTGTAGAAGGATTAGAGACATTGGACTATCTGGATAACCTCAAGGAC AGGGATCGAGTAACTGAACAAGGCGATGCAATTACATTCGAATCAGAAGTGGACAAACTCTATCTGAGTACTCCAACTAAGATAGCTATTTTGGACCACG AGAGGAAGAGAACATTTGTGTTGCGAAAAGATGGACTTCCAGATGCCATTGTTTGGAATCCATGGGATAAAAGAGCAAAGGCAATGGTTGATCTAGGTGA CGAGGAGTACAAGCATATGCTGTTAATAGGAGCTGCTTGCGTGGAGAAGCCTATAACTTTGAAACCAGGAGAAGAATGGAAAGGAAGGCAGGAGCTTTCT GTTGTTCCCTCTAGCTACTGCAGCGGACAACTCGATCCGCGGAAGGTGCTTCGTCAAAGCTAG
AA sequence Show only first row Show all	>Lus10026106 pacid=23173308 polypeptide=Lus10026106 locus=Lus10026106.g ID=Lus10026106.BGIv1.0 annot-version=v1.0 MSIVGGVGEENKFVEFCKGVNGLDKVILREVRGHSAEVYLNGGQVTSWKNEYREELLFLSSKAVFNPSKAIRGGIPISFPQFGTHGSLQQHGFARNTVWT VDKDPPPFPTVSSNRAFVDLILKPSEDDPKSWPHRFEFRIRIALGPGGDLMLTSRIRNTETDGKPFTFTFAYNTYFSVTDISEVRVEGLETLDYLDNLKD RDRVTEQGDAITFESEVDKLYLSTPTKIAILDHERKRTFVLRKDGLPDAIVWNPWDKRAKAMVDLGDEEYKHMLLIGAACVEKPITLKPGEEWKGRQELS VVPSSYCSGQLDPRKVLRQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57330			Galactose mutarotase-like supe...		Lus10026106 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	7.5	0.9516
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	12.2	0.9419
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	20.0	0.9395
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	21.2	0.9417
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	21.5	0.9380
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	22.3	0.9391
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	24.1	0.9338
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10009441 [exp]	24.2	0.9335
					Lus10008051 [exp]	24.2	0.9306
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	25.7	0.9383

Compare expression of checked genes

Lus10026106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.