Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12660 91 / 1e-20 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 88 / 3e-19 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT4G12730 82 / 8e-17 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 74 / 5e-14 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 68 / 3e-12 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G55730 67 / 8e-12 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G31370 66 / 8e-12 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000415 [exp] 288 / 9e-97 AT3G12660 91 / 4e-22 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10041630 [exp] 202 / 2e-60 AT3G12660 86 / 8e-19 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10024089 [exp] 188 / 1e-54 AT3G12660 81 / 4e-17 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10038004 [exp] 78 / 3e-16 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10009235 [exp] 79 / 1e-15 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10012344 [exp] 77 / 3e-15 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 77 / 7e-15 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 74 / 6e-14 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 73 / 8e-14 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037800 [exp] 116 / 4e-29 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 96 / 3e-22 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 91 / 2e-20 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.011G093500 [exp] 78 / 1e-15 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 77 / 4e-15 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 76 / 8e-15 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 69 / 2e-12 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10026107 pacid=23173098 polypeptide=Lus10026107 locus=Lus10026107.g ID=Lus10026107.BGIv1.0 annot-version=v1.0 ATGGCTTCCACATCCAGACATCTCCTCATCCTCCTCGTCCTCACCGTTACCGCTTCATTTTCGTCAGCATTCAACGTCACCAATGTCTTGGGCCCACTGT CCGAGTTCAGCACCTTCTCCAACTACTTGGCCCAGGTCGGAGTCGTTGGAATGATGGCAAATCTCAACAATGTCACCATTCTCGCCGTCGATAACGCCAA CATGGCTCCCATCTCGGGCAAATCCCGTGCTGAGATCGAGCGGATCATGACCATGCACGTTATCCCCGAATACTACGACTTGCATCGCTTGAACGCACTC CAAAACGGGACCGGATTGATCCGCACCGTCTACGCTCAAACTAAATTGGCCAAGGGTAAAGACGGAATGTTGCTTGTTACCAAGAAGGGTAAAATGGGAA GGTTCAGCTTCGCGAGCGCTATCCTCCCTAAATCTAAGCCCGGTGTCAATCTAGTCAAATCCGTCGTCGTTTTGTCGCGGAACATCTCTGTTTTCCACGT CAGCGGCTTGATCGTCACTCCTCCCGTCGTCAGCGTCGCTAGCGACGTCGACGCCGTCGACAGAGTCGCTTCGTCGGAAAAAATGACGGTGCAGCGCTCT TTCGTCCCCAAGACGAAGGAAAATCTCAAAGGCGGAAAGAAATTGCAGGTGGGAGAGGAGGAGTCATTGTTCGATTACGATTTGAAATCCGGTGAGAAGG CTGAATCGAAAGACTACAGCGGGGAGGAGGAAGCTCCGGCAAAATCGCCGGCCAAGGGTAAGTCCACCTCCTCTCCGAAGAAATCTCCCGCCAAGGCTCC ATCTTCTCCGAAATCGTCTAATTCGACCTCCGGCGGCAAGAAGGGAGCCAAGTCTCCCTCTCCGTCACCCTCGTCCGACGACTCTTCTGCTCCGGCGCCG TCCAAAACGAAGAGCGACGGTCCGTCACCGGCGAAGTCTACTGACGCGCCTTCGAAATCTCCCAGGAGAGCCAAGTCCTCAGCACCTTCGCCGTCCGACT CATCGGAAGATACGTCGGCGCCGTCCAAGTCAAAGTCTCCGTCTCCGTCTTCCGACTCGGCGCCTAGCGACTCTTCGGCGTCGTCACCTTCAGACGATTC CACGTCAAAGTCTCCTCCCGCTCCACCATCGGAAGAGTCGGGTTCGGCGGACGCTGATGCCCCGTCCGCAGATGGGCCGGCGGCGGAGGCACCAGCTGCG GGGGCTGCTCCGAGGACTGTCTCCTCCAGCGTTGGGATATTGATGATGGTTTTTATGGCTTTGTGGGCCTTAGCCGCGTAG
AA sequence Show only first row Show all	>Lus10026107 pacid=23173098 polypeptide=Lus10026107 locus=Lus10026107.g ID=Lus10026107.BGIv1.0 annot-version=v1.0 MASTSRHLLILLVLTVTASFSSAFNVTNVLGPLSEFSTFSNYLAQVGVVGMMANLNNVTILAVDNANMAPISGKSRAEIERIMTMHVIPEYYDLHRLNAL QNGTGLIRTVYAQTKLAKGKDGMLLVTKKGKMGRFSFASAILPKSKPGVNLVKSVVVLSRNISVFHVSGLIVTPPVVSVASDVDAVDRVASSEKMTVQRS FVPKTKENLKGGKKLQVGEEESLFDYDLKSGEKAESKDYSGEEEAPAKSPAKGKSTSSPKKSPAKAPSSPKSSNSTSGGKKGAKSPSPSPSSDDSSAPAP SKTKSDGPSPAKSTDAPSKSPRRAKSSAPSPSDSSEDTSAPSKSKSPSPSSDSAPSDSSASSPSDDSTSKSPPAPPSEESGSADADAPSADGPAAEAPAA GAAPRTVSSSVGILMMVFMALWALAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	0	1
					Lus10039759 [exp]	1.7	0.9374
					Lus10040066 [exp]	2.8	0.9234
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	3.5	0.8788
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	3.7	0.8709
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	6.5	0.8854
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	6.7	0.8254
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	6.9	0.8656
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	7.3	0.8653
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	9.6	0.8465
AT2G38900			Serine protease inhibitor, pot...		Lus10010859 [exp]	11.1	0.7803

Compare expression of checked genes

Lus10026107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.