Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79640 788 / 0 Protein kinase superfamily protein (.1.2) AT5G14720 543 / 0 Protein kinase superfamily protein (.1) AT4G10730 530 / 1e-180 Protein kinase superfamily protein (.1) AT4G24100 508 / 5e-172 Protein kinase superfamily protein (.1) AT1G70430 466 / 2e-157 Protein kinase superfamily protein (.1) AT1G23700 323 / 2e-103 Protein kinase superfamily protein (.1) AT4G14480 291 / 5e-91 Protein kinase superfamily protein (.1) AT3G15220 220 / 2e-62 Protein kinase superfamily protein (.1) AT1G53165 219 / 5e-62 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 203 / 2e-55 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000416 [exp] 1271 / 0 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014542 [exp] 546 / 0 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 531 / 0 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 501 / 1e-166 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 500 / 3e-166 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 485 / 2e-162 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 472 / 2e-157 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10021882 [exp] 313 / 3e-99 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 225 / 2e-68 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037900 [exp] 830 / 0 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 803 / 0 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 549 / 0 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 504 / 3e-170 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 503 / 9e-170 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 332 / 1e-105 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 269 / 9e-83 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 268 / 1e-81 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 223 / 3e-63 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 220 / 2e-62 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026108 pacid=23173244 polypeptide=Lus10026108 locus=Lus10026108.g ID=Lus10026108.BGIv1.0 annot-version=v1.0 ATGGACAGGAAGAAGTACCCGATCGGCCCTGAAAACTATGTCTTGTACGAGGAGATCGGCCAGGGCGTCAGCGCCACCGTCCGTAGAGCTCTCTGTGTCC CCTTCGATGAAATCGTCGCCATCAAGATCCTCGATTTCGAGCGCGACAACGTCGACTTGGCGAATATTTCCAGGGAGGTGCAGACGATGATATTGGTGGA CCATCCTAATGTTCTGAAATCGCATTGCTCCTTTGTGAGCGACCACAATCTGTGGGTTGTGATGCCGTTCATGGCAGGAGGTTCTTGTCTTCACATATTG AAGGCGGCTTTCCCAGAAGGGTTCGAGGAGGCAGTCATTGCCACCATATTGAAGGAAGTGTTGAAGGGTTTGGAGTATCTTCACCATCATGGCTGCATTC ATCGTGATGTTAAAGCTGGGAACATTCTTATAGATGAGCGTGGCTTAGTAAAGTTGGGAGATTTGGGTGTTTCTGCTTACCTCTTCGGCTCAGGCGATCG ACAACGCATGAGGAATACGTTTGTTGGGACTCCTTGCTGGATGGCACCTGAAGTTATGGAACAATTACATGGATATGACATTAGGGCTGATATTTGGTCT TTCGGAATAACTGCTTTAGAGCTTGCCCATGGGCATGCTCCTTTCTCTAAATATCCTCCCATGAAGGTGTTGCTCATGACTTTGCAAAATGCACCCCCGG GTTTGGACTATGAAAGAGATAAGAAATTCTCTAAATCATTCAAACAGATGATTGCCAGTTGCTTAGTAAAAGATCCTTCAAAACGTCCTTCAGCAAAGAG GTTGTTGAAGCATTCATTTTTCAAGCAAGCCAGGTCCAGCGACTATCTTTCACGGACGATTCTAGAGGGATTACCTGCTCTCGGTGTCCGTATTGAGGCA TTGAAGAGAAAGGAAGAAGATATGCTTGCCGAAAAGAAAATGCCTGATGGTCAGATGGAGGAAATATCACAGAATGAATACAAACGAGGAATTAGTGGTT GGAACTTCAACCTTGACGACATGAAAGCTCAGGCTTCTCTGATACCAGACGACGAGATTATAGGTGATAATTTTGAAGTTGGAAGCTCCAGTTGTTTATC AGCACTTGATGGAAATGATAAACAATATGAATGTCAAACCTCTTCTGCCAAACAGCCTACGGAAACGCTCTGTTCACCTCGGTTTAACACCAACATTGCT GAAAGGCCTACTTTTGAGATATGTACTAAAATTCCTAACGGCATGCCGAATTATTCCGAATCCAAATTGGTAGGACCAGGTAGCCTCAGCTTCAATTTCT GCGAACCTGTTGTTTCGCAAAGCAACAGCTTTGACACCAACATAGATAAATCAGCCACCCCACTGCCAAGAATCCCATCCAACAATGGTGCCACAGTAGC CCTAGATGGCTCTACTGAGGATATCGATGACAAATCAAAGCCACCAGTTGTTCAACAAAGAGGACGTTTCAAAGTCACTTCAGAGAGTGTTGACATAGAA AAAGTGATTACTCAGCATCCTGGAATTCCTCTATCGTCAACACCTGAAGCCACTTCCTCAAGTCACCTACTGAACTCTGTGCTTCCACTCGTACAGTCTG TCTTACAGACAAACATCCTTCAACGAGATGCTATCCTTGGCATAATGAAGCTGCTGTCCAACTCTGATTCTGCAGGCCTTCGTGCCCCCGACGGAGGATC AATACTGCAACTTGCTTCCATGGAGAAATCCTTGATGGAAGCAATGCAAGATAAGGAGAAGGAGTTGGTTCTTGAAGTAACAGACCTAAGATACAGGCTG ATATGTGCTCAGGAAGAACTCCAGAAGTACAAAACAGAAACTGCACAGGTATCGAGTAGCAGCCGGGCGGAGGGAGAACCAGCGCTGCAAATGCGGAACC ATGTCAACGGGGTCAATGGAGAAGTTACTGGGAATCAGAGAACAGAGAACGGTAGCATTGCTACTACCACCACAGCATCATCAGCGAAGAAGCCTAACAT GTTGAGTAGGGTTGTGAGTATGAAGTAG
AA sequence Show only first row Show all	>Lus10026108 pacid=23173244 polypeptide=Lus10026108 locus=Lus10026108.g ID=Lus10026108.BGIv1.0 annot-version=v1.0 MDRKKYPIGPENYVLYEEIGQGVSATVRRALCVPFDEIVAIKILDFERDNVDLANISREVQTMILVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHIL KAAFPEGFEEAVIATILKEVLKGLEYLHHHGCIHRDVKAGNILIDERGLVKLGDLGVSAYLFGSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDIRADIWS FGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSAKRLLKHSFFKQARSSDYLSRTILEGLPALGVRIEA LKRKEEDMLAEKKMPDGQMEEISQNEYKRGISGWNFNLDDMKAQASLIPDDEIIGDNFEVGSSSCLSALDGNDKQYECQTSSAKQPTETLCSPRFNTNIA ERPTFEICTKIPNGMPNYSESKLVGPGSLSFNFCEPVVSQSNSFDTNIDKSATPLPRIPSNNGATVALDGSTEDIDDKSKPPVVQQRGRFKVTSESVDIE KVITQHPGIPLSSTPEATSSSHLLNSVLPLVQSVLQTNILQRDAILGIMKLLSNSDSAGLRAPDGGSILQLASMEKSLMEAMQDKEKELVLEVTDLRYRL ICAQEELQKYKTETAQVSSSSRAEGEPALQMRNHVNGVNGEVTGNQRTENGSIATTTTASSAKKPNMLSRVVSMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	0	1
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	1.0	0.9134
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	3.7	0.8350
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	3.7	0.8924
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	4.0	0.8472
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	4.2	0.8501
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	5.5	0.8331
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	5.7	0.8863
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	9.4	0.8765
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	9.8	0.8137
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	13.0	0.8445

Compare expression of checked genes

Lus10026108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.