Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79650 466 / 7e-165 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT1G16190 440 / 7e-155 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G38470 363 / 2e-124 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT3G02540 274 / 7e-89 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT5G16090 86 / 9e-20 unknown protein AT1G53930 48 / 1e-06 Ubiquitin-like superfamily protein (.1) AT2G35635 47 / 2e-06 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 47 / 3e-06 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT1G55060 45 / 3e-05 UBQ12 ubiquitin 12 (.1) AT2G47110 44 / 4e-05 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034307 [exp] 362 / 2e-122 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034308 [exp] 353 / 5e-120 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 350 / 6e-119 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 310 / 5e-106 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041464 [exp] 188 / 7e-56 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10020933 [exp] 71 / 1e-14 ND 64 / 6e-13 Lus10030894 [exp] 44 / 4e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 44 / 4e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10008873 [exp] 43 / 4e-05 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G038000 [exp] 488 / 2e-173 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.003G186600 [exp] 481 / 4e-171 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.004G100700 [exp] 364 / 1e-124 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.017G114000 [exp] 362 / 1e-123 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.010G126200 [exp] 349 / 9e-119 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.008G119700 [exp] 299 / 4e-99 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.005G096700 [exp] 47 / 2e-06 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.007G067500 [exp] 47 / 2e-06 AT1G31340 224 / 1e-76 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.002G062500 [exp] 45 / 1e-05 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.016G077000 [exp] 44 / 1e-05 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09280 [flax] [poplar] XPC-binding XPC-binding domain CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10026110 pacid=23173199 polypeptide=Lus10026110 locus=Lus10026110.g ID=Lus10026110.BGIv1.0 annot-version=v1.0 ATGAAGCTCTCCGTTAAAACTCTCAAAGGCACCCGTTTCGAAATTAGGGTTCAGCCCACAGACACCGTAATGGCTGTGAAGAAGCAAATTGAGGACGTGC AAGGTAAAGACAATTACCCTTGCGCTCAGCAGCTGTTGATCCACAATGGCAAAGTTTTGAAAGATGAGACTACTTTGGCCGCCAACGATGTCTCTGAAGA TGGCTTTCTCGTTGTTATGCTTAGTAAGAGTAAAACATCTGGTTCTGCTGCGACGTTGCCCACTCAGCCTGCATCTGCAACTCCACCTACAGCTGCGCAA ACCTCAAATTCAACTCCAGCACCTGCACAAGCAACGGTTTCACAGAGCACAGCGTCTGTTTCTGATGCAGCAACAGCCAATCCACCAACCGACACGTACA GTGACGCTGCTTCAAATTTAGTTGGTGGTAGCAGCCTAGAGCAGACTATTCAGCAAATAATGGATATCGGCGGTGGGAACTGGGACAAAGAAGCTGTTAC TCGTGCTCTTAGAGCTGCCTATAACAATCCAGAACGAGCGATAGATTACTTATACTCTGCCATTCCTGAAACGGTTGAAGTGAATGTTCCTGTGGCTCGT GTGCCTACTGCTCAGGCTGCAGAATCAGGAGCAGCCCCTGGAGCTCATGTATCTGGACCGCCAAATGCCTCTCCCTTGAATATGTTTCCTCAGGAGGCTC TTGCTGGTGCCGGAGCTGGTGGTGGGCTTGCTTCTTTGGACTTCCTTAGAAACAACCAGCAGTTCCAAACATTGCGCTCGATGGTTCAGACAAATCCTCA GATCTTACAGCCCATGCTTCAGGAGCTTGGGAAGCAAAACCCCAACCTTTTGAGAATGATTCAGGAGCATCATGAAGAATTTTTGCAGCTAATAAATGAA CCTCAGGATGGTTCAGAAGAGGAGATGTTTGAACAACCTGATCAAGAAATGCCCCATGCAATCAACGTAACACCTGCTGAGCAGGCGGCTATCGAACGGC TCGAAGCCATGGGATTCGATAGACCCCTAGTGATTGAAGCGTTTCTGGCTTGCGACCGGAACGAGGAATTGGCGGCGAATTACCTTCTGGAGCATGCTGG AGATTTCGAAGATTGA
AA sequence Show only first row Show all	>Lus10026110 pacid=23173199 polypeptide=Lus10026110 locus=Lus10026110.g ID=Lus10026110.BGIv1.0 annot-version=v1.0 MKLSVKTLKGTRFEIRVQPTDTVMAVKKQIEDVQGKDNYPCAQQLLIHNGKVLKDETTLAANDVSEDGFLVVMLSKSKTSGSAATLPTQPASATPPTAAQ TSNSTPAPAQATVSQSTASVSDAATANPPTDTYSDAASNLVGGSSLEQTIQQIMDIGGGNWDKEAVTRALRAAYNNPERAIDYLYSAIPETVEVNVPVAR VPTAQAAESGAAPGAHVSGPPNASPLNMFPQEALAGAGAGGGLASLDFLRNNQQFQTLRSMVQTNPQILQPMLQELGKQNPNLLRMIQEHHEEFLQLINE PQDGSEEEMFEQPDQEMPHAINVTPAEQAAIERLEAMGFDRPLVIEAFLACDRNEELAANYLLEHAGDFED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	0	1
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	8.8	0.7983
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	12.3	0.7922
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	12.8	0.7879
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	13.4	0.7610
AT3G54750			unknown protein		Lus10015991 [exp]	13.8	0.7761
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	15.4	0.7801
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10007108 [exp]	15.7	0.7189
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	15.8	0.7346
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10034973 [exp]	16.0	0.7618
AT1G24160			unknown protein		Lus10002952 [exp]	20.0	0.7601

Compare expression of checked genes

Lus10026110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.