Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16180 574 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 440 / 2e-153 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 146 / 1e-39 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT2G33205 140 / 2e-37 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 137 / 2e-36 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008709 [exp] 649 / 0 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10034023 [exp] 424 / 5e-147 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 416 / 2e-143 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 123 / 7e-31 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 115 / 3e-28 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 97 / 1e-21 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 96 / 1e-21 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186500 [exp] 590 / 0 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 578 / 0 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.008G201900 [exp] 401 / 3e-138 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.018G076000 [exp] 134 / 2e-35 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 117 / 5e-29 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10026111 pacid=23173120 polypeptide=Lus10026111 locus=Lus10026111.g ID=Lus10026111.BGIv1.0 annot-version=v1.0 ATGTGGGCAGCTTCCTGTCTCGCGTCGTGCTGTGCGGCGTGCGCTTGCGATGCTTGTCGCACCGTAGTCTCTGGGATAAGCCGAAGGTCTGCGAGAATCG CCTACTGCGGTCTCTTTGGACTTTCTCTGATCGTCTCCTGGATTCTTCGTGAGGTCGCTGCACCACTGCTGGAGAGTATTCCATGGATCAATCATTTCCA TAAGACACCTGATAGGGAGTGGTTCGAAACTGATGCTGTGCTGCGCGTTAGTTTGGGGAATTTTCTCTTCTTTACCATTCTGGCAGTTATGATGGTTGGT GTTAAGAGTCAGAAGGATCCTCGTGACAGTTTGCACCATGGTGGCTGGATGATGAAGGTCATCTGCTGGTTCCTTCTGGTCATCTTTATGTTCTTCCTTC CAAATGAGATCATCAGCTTTTATGAGTCGACATCCAAATTTGGTTCGGGGCTGTTCCTTCTTGTTCAGGTGGTGCTTTTGTTGGATTTTGTTCATGGATG GAATGACAAATGGGTTGGATATGATGAACAGTTTTGGTACATAGCACTGCTTGTCGTTTCACTTGTATGCTATGTAGCAACATTCGTTTTCTCCGGGTTT CTCTTCCACTGGTTCACACCTTCTGGGCAGGATTGTGGATTAAACACCTTCTTCATTGTTATGGTTCTGATTCTTGCGTTTGTCTTTGCTGTTGTTGCAC TTCATCCTGCTGTGAATGGAAGCATTTTACCGGCTTCAGTTATATCGCTGTACTGCATGTATCTGTGCTATAGTGGATTATCCAGCGAGCCAAGGGACTA TGCATGCAACGGTCTTCACAAGCATTCAAAGGCGGTCTCGACCGGTACTCTTACTCTAGGGCTCCTCACAACCGTTCTATCAGTTGTTTACTCTGCTGTC CGTGCTGGATCTTCCACAACACTGCTTTCTCCTCCAAGCTCACCCCGAGCAGGTAAGCCATTGCTGCCAATGGACAGCAAGGCGGAAGACCAGGAAGAGA AGGAGCATGCTAAGCCTGTCACTTACTCGTACGCTTTCTTCCACATCATCTTCTCTCTTGCTAGCATGTACTCTGCAATGCTTTTGACTGGGTGGTCCGG CTCTGTTGGGGAGAGTGGAAACTTGGTCGATGTCGGGTGGCCATCGGTGTGGGTTCGTATCCTTACAGGCTGGGCAACTGCAGGTCTCTACATTTGGTCC GTGGTCGCTCCGATTATGTTCCCAGACAGGGAGTTCTAA
AA sequence Show only first row Show all	>Lus10026111 pacid=23173120 polypeptide=Lus10026111 locus=Lus10026111.g ID=Lus10026111.BGIv1.0 annot-version=v1.0 MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFGLSLIVSWILREVAAPLLESIPWINHFHKTPDREWFETDAVLRVSLGNFLFFTILAVMMVG VKSQKDPRDSLHHGGWMMKVICWFLLVIFMFFLPNEIISFYESTSKFGSGLFLLVQVVLLLDFVHGWNDKWVGYDEQFWYIALLVVSLVCYVATFVFSGF LFHWFTPSGQDCGLNTFFIVMVLILAFVFAVVALHPAVNGSILPASVISLYCMYLCYSGLSSEPRDYACNGLHKHSKAVSTGTLTLGLLTTVLSVVYSAV RAGSSTTLLSPPSSPRAGKPLLPMDSKAEDQEEKEHAKPVTYSYAFFHIIFSLASMYSAMLLTGWSGSVGESGNLVDVGWPSVWVRILTGWATAGLYIWS VVAPIMFPDREF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	0	1
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	1.0	0.9434
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	1.4	0.9284
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	2.2	0.9101
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	2.4	0.9188
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	2.8	0.9163
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	3.6	0.8887
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	3.7	0.9009
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	4.0	0.9001
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	4.2	0.8785
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	4.7	0.8928

Compare expression of checked genes

Lus10026111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.