Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 478 / 6e-169 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 352 / 1e-119 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 341 / 2e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 337 / 1e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 316 / 2e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 315 / 5e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 312 / 6e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 308 / 1e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 296 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 264 / 4e-85 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008706 [exp] 670 / 0 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 632 / 0 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 625 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 550 / 0 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 325 / 6e-109 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 323 / 3e-108 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 313 / 2e-104 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 311 / 2e-103 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 310 / 3e-103 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032500 [exp] 510 / 0 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 508 / 1e-180 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 473 / 6e-167 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 464 / 4e-163 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 346 / 2e-117 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 331 / 4e-111 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 327 / 8e-110 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 320 / 7e-107 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 314 / 8e-105 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 297 / 2e-98 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10026113 pacid=23173121 polypeptide=Lus10026113 locus=Lus10026113.g ID=Lus10026113.BGIv1.0 annot-version=v1.0 ATGGAGAATGTTGGATTTCTTGAGACTTCAAAGCCATACTTTGCAATGGTAGCATTGCAGTTTGGGTATGCTGGGATGAACATCATCACCAAAGTCTCCC TCAACCATGGCATGAGCCACTATGTCCTCGTCGTCTATCGTCACGCCATTGCAACTGCCGTTATCGCTCCTTTCGCTCTCTTCTTCGAAAGGAAAGGCCA ACCCAAGATCACCATCCGTGTCTTCCTCCAACTTTTCATCCTTGGTCTACTTGGACCTGTGATAGACCAAAATTTCTACTATGCCGGACTGAAGTACACA TCCCCAACATTCTCATGCGCAATGAGCAACATGCTTCCTGCCATGACATTTGTGATGGCAGTCATTTGCCGGATGGAAATCGTAGACCTGAAGAAAGTGA GGTGCCACGCCAAGTTGATAGGGACACTAGTTACTGTAGCAGGAGCAATGCTAATGACTTTGTACAAAGGACCAATTGTCAATTTGGTTTGGTCCAAAAA GACAAACCAATCTTCAGGAACTGAAACCAACGATGCCAACAGTGACAAAGATTGGTTCAAGGGTTCCATTCTGCTCATCCTAGCCACTCTTGCTTGGGCC ACACTCTTTGTCTTGCAAACCAAGGCATTGAAGACCTACAAGAATCATCAGCTGTCCTTGACAACACTGGTGTGCTTCATTGGGACAGTCCAAGCAATTG CTGTTACTCTTGTGGTGGAACACAATCCTTCTGCCTGGAGGATAGGCTTTGACATGAACCTCCTGGCTGCTGCCTATGCTGGGATTTTTGCATCAAGCCT TTCATACTATGTTCAAGGCATTGTGATCAAGAAGAAAGGACCGGTTTTCGCCACCGCATTCAGCCCGTTGATGATGATCGTTGTAGCAATGATGGGTTCT TTCATCTTGGCTGAGAAGATATTCCTTGGAGGTATCATAGGATCTGTGTTGATAGTGATAGGACTGTACTCAGTTCTGTGGGGCAAGCAGAAGGAGAAAA TGGACATGGATGCTGCTGGTGGAATTCCTGATCCTGCGAAGGGATCAGGATCAGTTAACAATGGGACGAACTCAGTGTCGACAGACATCGAAGCTAATAA CGAAGCCATCGATAGCAAACAGATTGCTATAGTAGCACCAATTTGCATGCCTTTGGCAGATGAAGTTCACCCAAGTCAAGAAACCAATGCAACTTGA
AA sequence Show only first row Show all	>Lus10026113 pacid=23173121 polypeptide=Lus10026113 locus=Lus10026113.g ID=Lus10026113.BGIv1.0 annot-version=v1.0 MENVGFLETSKPYFAMVALQFGYAGMNIITKVSLNHGMSHYVLVVYRHAIATAVIAPFALFFERKGQPKITIRVFLQLFILGLLGPVIDQNFYYAGLKYT SPTFSCAMSNMLPAMTFVMAVICRMEIVDLKKVRCHAKLIGTLVTVAGAMLMTLYKGPIVNLVWSKKTNQSSGTETNDANSDKDWFKGSILLILATLAWA TLFVLQTKALKTYKNHQLSLTTLVCFIGTVQAIAVTLVVEHNPSAWRIGFDMNLLAAAYAGIFASSLSYYVQGIVIKKKGPVFATAFSPLMMIVVAMMGS FILAEKIFLGGIIGSVLIVIGLYSVLWGKQKEKMDMDAAGGIPDPAKGSGSVNNGTNSVSTDIEANNEAIDSKQIAIVAPICMPLADEVHPSQETNAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	0	1
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10005780 [exp]	5.4	0.8092
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	6.5	0.7824
					Lus10011438 [exp]	6.7	0.7870
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018418 [exp]	7.5	0.7394
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	27.7	0.7129
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	28.9	0.7874
AT1G06930			unknown protein		Lus10025251 [exp]	31.3	0.7723
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	43.5	0.7557
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	43.6	0.7823
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	44.4	0.7755

Compare expression of checked genes

Lus10026113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.