Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05460 162 / 4e-48 RNI-like superfamily protein (.1) AT4G05475 146 / 1e-41 RNI-like superfamily protein (.1) AT4G05470 132 / 1e-36 RNI-like superfamily protein (.1) AT4G03630 130 / 2e-36 RNI-like superfamily protein (.1) AT4G05490 129 / 5e-35 RNI-like superfamily protein (.1) AT4G05497 122 / 2e-33 RNI-like superfamily protein (.1) AT5G52480 114 / 4e-30 RNI-like superfamily protein (.1.2) AT4G08980 73 / 2e-14 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT5G57900 62 / 5e-11 SKIP1 SKP1 interacting partner 1 (.1) AT4G03635 46 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023277 [exp] 289 / 1e-96 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 280 / 6e-93 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10008704 [exp] 271 / 2e-91 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10036483 [exp] 59 / 1e-09 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 55 / 2e-08 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10019104 [exp] 47 / 8e-06 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10034452 [exp] 46 / 2e-05 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10005745 [exp] 43 / 0.0001 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2) Lus10030102 [exp] 42 / 0.0005 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099100 [exp] 61 / 3e-10 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.016G019500 [exp] 57 / 4e-09 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.018G104900 [exp] 56 / 8e-09 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.012G137700 [exp] 40 / 0.0008 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026115 pacid=23173258 polypeptide=Lus10026115 locus=Lus10026115.g ID=Lus10026115.BGIv1.0 annot-version=v1.0 ATGGATCCACCGGAAGAGTCCCGGGGCAGTGATGTCGTCGCTGAAGACGGATCTATGTTAGGTCGGGACTGGGCGGAACTGTCGCCGGAGCTTCTCACAG AAATCATGAGCCATCTAGGGTTGAGAACTCGGCTGAGAACTTTCCAGAAAGTGTGCTCGTCATGGCGGAAGGTTTCCCGGGACCCGTACCTGTGGAGATG TATCAACATCGAGGGCGATTTCTGGGATTCAGAGTTTGATTTTGAAAATGTAGTGTCTAATTCGGAGCGATATTGGGTGGAGGCTGTAGACATGAGCTGT GGGGGATTGCTTTCTCTCAGTATGGAGGAATTCGGCACTGATAAACTGCTGAATGATATCGCTGATAAATCAAGCCAGCTTAAGAGTCTTCGACTCGTAG ATGTCGTGGCATTTTCGGACCAAGGGCTCAGCACAGCAGTCCCTAAATTTCATTTCCTTGAAGAGCTGGAAATTTCTTACTGCACCTTTTCGTGTCATTC ATTGCTTGCTGGGAAGATGACTTGGAGGCAACAGCAATTGCAGACAACATGCCGGATATTCGGGAACAAGCTAACGAATCATGGTTTGCAAGCCATTCTC GATTGTTGCAGACACTTGGAGTCCCTCGACCTTCGACAGTGTTTCAATTTGAAGTTGGAAGGGGATCTGGGGAAGAGATGCCGGCAGCAGATCAAGGATC TGCGATGTCCTGAAGATTCAGTTGATGACTATCCCTACAACGCATCCTATGATGGATCATCTGAAGAGGATTATCCATCAGGATCCTTTGACTATGAGTT TGAAGAGGATTATCCATCAGAAGAATCCTCTGACTACGTGTTTTCCTCCGATGATGAGGAGCTCTCTGATATCGAGCTCTCTGATGCAGAGTTTGATTAA
AA sequence Show only first row Show all	>Lus10026115 pacid=23173258 polypeptide=Lus10026115 locus=Lus10026115.g ID=Lus10026115.BGIv1.0 annot-version=v1.0 MDPPEESRGSDVVAEDGSMLGRDWAELSPELLTEIMSHLGLRTRLRTFQKVCSSWRKVSRDPYLWRCINIEGDFWDSEFDFENVVSNSERYWVEAVDMSC GGLLSLSMEEFGTDKLLNDIADKSSQLKSLRLVDVVAFSDQGLSTAVPKFHFLEELEISYCTFSCHSLLAGKMTWRQQQLQTTCRIFGNKLTNHGLQAIL DCCRHLESLDLRQCFNLKLEGDLGKRCRQQIKDLRCPEDSVDDYPYNASYDGSSEEDYPSGSFDYEFEEDYPSEESSDYVFSSDDEELSDIELSDAEFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05460			RNI-like superfamily protein (...		Lus10026115 [exp]	0	1
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	11.0	0.6211
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	15.9	0.6240
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	25.7	0.5997
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	33.9	0.6053
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	37.8	0.5785
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	50.1	0.5629
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	57.1	0.5615
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	57.8	0.5779
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	61.2	0.5607
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	61.6	0.5725

Compare expression of checked genes

Lus10026115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.