Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04945 356 / 5e-120 HIT-type Zinc finger family protein (.1.2.3) AT5G63830 47 / 2e-05 HIT-type Zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008703 [exp] 804 / 0 AT1G04945 358 / 3e-121 HIT-type Zinc finger family protein (.1.2.3) Lus10003211 [exp] 44 / 0.0002 AT5G63830 410 / 5e-142 HIT-type Zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G228000 [exp] 425 / 1e-146 AT1G04945 331 / 7e-111 HIT-type Zinc finger family protein (.1.2.3) Potri.003G145100 [exp] 43 / 0.0003 AT5G63830 396 / 3e-136 HIT-type Zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10026116 pacid=23173210 polypeptide=Lus10026116 locus=Lus10026116.g ID=Lus10026116.BGIv1.0 annot-version=v1.0 ATGACACGTCAGCTTCTCCTCCTTCATAAACCCTGGAATTCATTGACGCCCGCCAATGTGAACCCTCGTAAACCTCTCTCTCTATTCCTCTACCTCCCCG TAGAGTCTGCCATGGAGGAGCAGCGGTCGCCGGGTCTTGGGGCTCCAACAGAACAAAGCCCTAAACAAAATCAGCTCCAAGAAGCTCGATCCACTGTAGT ATTTTGCGCTGAGTGCCAGGAGAAGCAATCGAAATACAAATGCCCAGGCTGCTCATTACGAACCTGCAGCCTCCCTTGCGTCAAATCACATAAGCTCCGT ACTGGCTGCTCGGGAAAACGGGAGGTCGCGCCATTCCTCCCTATCTCTCAGTTCGACGATAATACACTTCTTTCAGATTATAACTTTCTCGAAGAAGTGA AGAGAGTTGCAGATTCAGGTCAAAGGATGAGATCTCAAATGCGTGTATACCCTCGTTATCAGTTACCGCCGAACCTTAAAACCCTTAAGAGTGTTGCATC AAGTCGTAGGACAAATCTGATGATTCTTCCGAGTGGGATGTCGAGGAGGGAAAAGAACCAGACTCGATACGACAATAGGAAAAAAGTGATCTTCTGGACA ATAGAATGGAGATTTCACTCGACTGGTGTTGTTACACTAGACCATGGAGTAAATGAAAATGCATCAATTTTCTCCGAAATTCAGAAGCATCTGCAGCCTG GACCGTGGAAAAGCAAGTTGAAGCAGTTCTGTGAAGTTGATTTGGAATCTCTCAAGTGCTTCATTCGCAAATATCCCAAGGGAAAATCACCGTTCCTCGA ATTGGACATAAAGGCCCCTCTAAGGCAACAAATAGCTCATCTAAGCATCTTAGAGTACCCTGTCATCCATGTTTATCTCCCTTCTCACAGTTACGATTTC GAAGTTGTGAAGGACCTACGCCCAGTGGCTTATCATCGGCACGAAGCCAAGAGTTCCATCAGCCATGATCAACAGAGCCCCAAAGGAGTTGCCTTCAAGG TGGAGGAGATTCAAGAAGAAGAGGAAAATGGCTCTCCGGAAGTTCAGGTTTATGATCTGGCACAGAAGTCGATTATTACTACAAGTCCAGGAAACAAGAC TAGTCCTCAGAAAGCCACCACGGATTGTTCCACTGTAGTCGACAGCTCAGTGGCAAACGACTCTGCAACAGAGGACAAACGGGCTGGCATATTTGACGGA ATGGATTTCAATTTCGACCCAAGCCTGCTGGATTCGTATGCGGATATACTTGCCGAGATAGATACCACTGACTTCCTGGATTTTGAAGGTGAGTTACCGA TGGAGATGGAAGGTGATGAGGAGCAGGTTTTTGGGTCAAATCTGTCAGTGGAAGAGTTAGAAGAAGGGGAAATAGCCTAG
AA sequence Show only first row Show all	>Lus10026116 pacid=23173210 polypeptide=Lus10026116 locus=Lus10026116.g ID=Lus10026116.BGIv1.0 annot-version=v1.0 MTRQLLLLHKPWNSLTPANVNPRKPLSLFLYLPVESAMEEQRSPGLGAPTEQSPKQNQLQEARSTVVFCAECQEKQSKYKCPGCSLRTCSLPCVKSHKLR TGCSGKREVAPFLPISQFDDNTLLSDYNFLEEVKRVADSGQRMRSQMRVYPRYQLPPNLKTLKSVASSRRTNLMILPSGMSRREKNQTRYDNRKKVIFWT IEWRFHSTGVVTLDHGVNENASIFSEIQKHLQPGPWKSKLKQFCEVDLESLKCFIRKYPKGKSPFLELDIKAPLRQQIAHLSILEYPVIHVYLPSHSYDF EVVKDLRPVAYHRHEAKSSISHDQQSPKGVAFKVEEIQEEEENGSPEVQVYDLAQKSIITTSPGNKTSPQKATTDCSTVVDSSVANDSATEDKRAGIFDG MDFNFDPSLLDSYADILAEIDTTDFLDFEGELPMEMEGDEEQVFGSNLSVEELEEGEIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	0	1
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	2.8	0.8361
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	7.6	0.7891
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	12.7	0.8637
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	14.0	0.7507
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	14.2	0.8372
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	15.0	0.8424
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	15.7	0.8564
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	16.0	0.8470
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	18.2	0.8335
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	18.2	0.7768

Compare expression of checked genes

Lus10026116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.